• The National Center for Biotechnology Information (NCBI)
• WWW BLAST at NCBI
• European Bioinformatics Institute (EBI) (ClustalX, ClustalW available from their ftp site)
• The Institute for Genomic Research (TIGR)
• MIPS (Munich Information Center for Protein Sequences
• Oxford University Bioinformatics Centre
• CBS (Center for Biological Sequence Analysis) at Technical University of Denmark
• Computational Biology at UC Santa Cruz (HMM etc.)
• SAM (Sequence Alignment and Modeling System) at UC Santa Cruz
• University of Oxford, Mathematical Genetics and Bioinformatics
• EMBOSS: The European Molecular Biology Open Software Suite


• Institut Pasteur, Biological Software (lots of software including Web ClustalW, Web Phylip3.6a3!)
• Bioinformatics Web: IU Center for Genomics & Bioinformatics (lots of software, including free EMBOSS WEB!)
• Pedro's BioMolecular Research Tools
• CMS MBR (CMS Molecular Biology Resource)
• eBioinfogen.com: Sequence Analysis Tools list
• Pôle Bio-Informatique Lyonnais


• UNMC Computer Aided Genetic Sequence Analysis (class notes included)
• O'Reilly - Bioinformatics
• Genome News Network


• The BioPerl Project
• The BioJava Project
• The BioPython Project


• Support Vector Machine
• SVMlight (Support Vector Machine software)
• Support vector classifiers: a first look

• Se-Al: Sequence Alignment Editor (Mac OS 9/X)
• SeaView: a graphical multiple sequence alignment editor (Mac OS 9/X, Windows, Unix/Linux)
• BioEdit: A biological sequence alignment editor for Windows
• GeneDoc: A Full Featured Multiple Sequence Alignment Editor, Analyser and Shading Utility for Windows
• GeneStudio: A sequence analysis software (including the free SeqVerter, format converter) (Windows)
• eBioinfogen.com: Free Software List (Windows, Mac, Unix/Linux)

• PAUP* 4.0
• MacClade Home Page
• PHYLIP Home Page
• Ziheng Yang's Home Page (PAML etc.)
• University of Oxford, Evolutionary Biology Group (Seq-Gen, Se-Al, and a lot more)
• MrBayes: Bayesian inference of phylogeny
• GDA (Genetic Data Analysis)
• GenePop : Population genetics at work
• Arlequin (a software for population genetics data analysis)
• Genetics Software from the Slatkin Lab, UC Berkeley
• Fu's home page
• Molecular Evolutionary Genetics Analysis (MEGA)
• Correspondence Analysis of Codon Usage
• GCUA:General Codon Usage Analysis
• CUTG (Codon Usage Database)
• Biology Links (Databases, Evolution, Software, etc.)


• EvolDir (Evolutionary Directory)
• SMBE (Society of Molecular Biology and Evolution)

• ExPASy - SWISS-PROT and TrEMBL
• PIR International Protein Sequence Database
• iProClass: An intergrated Protein Classification Database
• Protein Information Resource (PIR) Database Information
• ExPASy - Proteomics Tools
• ExPASy - PROSITE
• Pfam (Database of protein domain and HMMs)
• TIGRFAMs (TIGR Protein Families)
• PRINTS (Protein Fingerprint Database)
• SMART
• InterPro Home
• MetaFam Home
• The Protein Domain Database (ProDom)
• Blocks WWW Server
• ProtoMap

• PDB: Protein Data Bank
• PDBsum: A database of the known 3D structures of proteins and nucleic acids
• NCBI Structure Group (MMDB: Molecular Modeling DataBase, VAST Structure Neighbor Search, etc.)
• SCOP: Structural Classification of Proteins
• CATH - Protein Structure Classification
• DALI: Protein Structure Comparison by Diatance Matrix Alignment
• FSSP: Fold Classification based on Structure-Structure alignment of Proteins
• HOMSTRAD: Homologous Structure Alignment Database

• GPCRDB home page
• G-Protein Coupled Receptor Database (this link has been broken for a long time)
• SenseLab and Olfactory Receptor DataBase (ORDB)
• Ligand Gated Ion Channel database
• Transport Protein Overview
• NIHS: Database: Receptor DB

• TMpred Server
• SOSUI WWW Server
• TMHMM server
• HMMTOP
• PSIPRED
• PREDATOR

• Drosophila melanogaster @ NCBI
• FlyBase @ flybase.bio.indiana.edu
• Berkeley Drosophila Genome Project
• Interactive Fly, Drosophila
• Segmentation Gene Nets

• euGenes: Genomic Information for Eukaryotic Organisms
• The Arabidopsis Information Resource
• Whitehead Institute/MIT for Biomedical Research: Center for Genome Research
• The Sanger Centre, C. elegans Genome Project
• The Sanger Centre, Genome Project
• WormPep: The Sanger Centre, C. elegans Project
• Human Genome Project Information

• The World-Wide Web Virtual Library: Statistics
• S-PLUS (Insightful Home page)
• The R Project for Statistical Computing (GNU S)
• ADE-4 on the Web

• Fourier Analysis for Beginners (by Thibos, Indiana Univ)
• Mathematics of the Discrete Fourier Transform (DFT)
• Understanding the Discrete Fourier Transform

• Alphabetical Directory of Linux Commands
• UNIX Commands and Unix tutorial list
• A Basic UNIX Tutorial
• Unix Tutorial
• UNIX Tutorial: Absolute Beginner to Linux "Expert" in 10 Lessons
• Unix Tutorial for Molecular Biologists
• UNIX Unleashed, System Administrator's Edition (including descriptions for Unix Shells)

• ShellScript.com (many shell scripts & Unix Primer)
• BASH Programming - Introduction HOW-TO
• C-shell Cookbook
• Unix Shell Scripts (C-shell)

• Perl Programming Course for Bioinformatics and Internet (including UNIX)
• Bioperl course at Pasteur Institute
• www.perl.com - The source for Perl
• bio.perl.org

• O'Reilly Network - The Source for Open and Emerging Technologies
• Bruce Eckel's MindView, Inc. OOP Resources (Thinking in C++, Thinking in JAVA etc.)
• Dr. Dobb's Web Site

• MySQL: The World's Most Popular Open Source Database
• MySQL Reference Manual
• MySQL Tutorial (Chapter 3 of "MySQL Reference Manual")
• The World Wide Web Consortium (W3C)
• Apache HTTP Server Project
• Accelrys (GCG, MacVector, Discovery Studio Gene)
• VNC - Virtual Network Computing from AT&T Laboratories Cambridge
• VNCThing (VNCviewer for Macintosh)
• WinSCP: A Free Secure Copy software for Windows
• PuTTY: A Free Win32 Telnet/SSH Client
• EditPlus: A text editor, HTML editor and programmers editor for Windows
• Network Associates (McAfee AntiVirus)
• VMware (Virtual Computing)
• StarNet Communications - XWin32 (PC X-Window server)
• RedHat Linux
• Apple
• O'Reilly - Computer Books

• UNL Home
• UNL School of Biological Sciences
• Plant Science Initiative
• Center for Biotechnology
• Beadle Center conference room schedule
• Bioinformatics Club at UNL
• Life Sciences Interdisciplinary Graduate Recruitment Program (LSIGRP)
• UNL Dept. of Computer Science and Engineering
• UNL LISTSERV site
• UNL - Computer Sales Catalog
• University of Nebraska Software Server
• UNL Information Services Communications
• University of Nebraska-Lincoln Libraries
• UNL Electronic Journals
• Electronic Forms: UNL Libraries
• UNL Lotus Notes Web Site
• UNL Logos for Web, Print, and Presentation Materials

• Web of Science (from outside of UNL, HTTP Proxy configuration required)


• Science
• Nature
• Bioinformatics
• Molecular Biology and Evolution (MBE)
• Journal of Molecular Evolution (JME)
• The Proceedings of the National Academy of Sciences Online (PNAS)
• Genetics Online
• Gene
• Nucleic Acids Research
  
• Genome Research
• Genome Biology home page
• BioMedNet
• IDEAL (Academic Press Journals)
• Annual Reviews
• O'Reilly Computer Books


• Best Book Buys (Book price comparison)
• BookBrowse.com (include Book price comparison)
• BestBookDeal.com - online book price comparison service

• Junhyong Kim Laboratory Web at Yale
• Jeff Powell Lab at Yale
• Yale University, Dept. of Ecology and Evolutionary Biology
• Dan Hartl Lab at Harvard
• Harvard University, Dept. of Organismic and Evolutionary Biology
• National Institute of GENETICS, Japan

• UNL - Office of Research
• Nebraska EPSCoR
• National Science Foundation (NSF)
• NSF - Directorate of Biological Sciences
• NSF - FastLane
• NIH Home Page
• GrantsNet

• Lincoln Airport
• Lincoln/Lancaster County Convention and Visitors Bureau
• Merriam-Webster OnLine
• Google search
• Deja News

[No-frame pages] -›  Home - Research - Publications - Tools - People - Resources - Teaching - Programs - Links - Lab
Back Home with frame