Links

Protein and protein familiy databases

• GPCRDB: Information system for G protein-coupled receptors (GPCRs)
• UniProt: List of 7-transmembrane G-linked receptor entries
• UniProt (Swiss-Prot and TrEMBL)
• PIR
• InterPro
• PROSITE: Database of protein families and domains
• Pfam: Database of protein families and HMMs
• PRINTS
• SMART: Simple Modular Architecture Research Tool
• Superfamily: HMM library and genome assignment server
• PANTHER Classification System
• TIGRFAMs

Genome databases

• TAIR: The Arabidopsis Information Resource
• NCBI: Genome
• JGI: Eukaryotic Genomics
• FlyBase
• Fungal Genome Initiative
• Ensemble Genome
• Sanger Institute Genome Sequencing Projects

Methods

• BLAST: Basic Local Alignment Search Tool
• GPCRHMM
• SAM: Sequence Alignment and Modeling System
• SVM-light
• Tools for PROSITE
• FingerPRINTScan
• HMMTOP
• Phobius

GPCR classifiers

• GPCRTree: a classifier for G Protein coupled receptors (Davies et al. 2007)
• PRED-GPCR: GPCR family classification from sequence alone (Papasaikas et al. 2003)
• GPCRsclass: dipeptide composition based prediction of amine type of G-protein coupled receptors (Bhasin and Raghava 2005)
• GPCRpred: prediction of families and superfamilies of G-protein coupled receptors (Bhasin and Raghava 2004)
• GRIFFIN (Yabuki et al. 2005)
• SEVENS (Ono et al. 2005)
• GPCR subfamily classifier (Karchin et al. 2002) [no longer available]

Other links

• Arabidopsis thaliana 7TMR Mining (Supplementary web for the Genome Biology paper)
• Moriyama Lab at UNL
• Lu Lab at UNO
• UNL Bioinformatics