7TMRmine
— a hierarchical mining tool for 7TMRs —
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TM/7TMR Mining Summary Statistics

Organismal groups No.
genomes
No. proteins % non-TM proteins % TM proteins SAM2 GPCRHMM 6 classifiers
Phobius HMMTOP Phobius HMMTOP
Plants 25 690,776 79.46 59.59 20.54 40.41 444 632 14,016
Fungi 14 103,189 78.10 61.35 21.90 38.65 73 407 3,981
Deuterostomia 13

305,727

73.91 58.56 26.09 41.44 13,342 12,749 21,564
Protostomia &
 other metazoa
26 472,146 78.64 64.79 21.34 34.97 7,337 6,335 20,194
Protists 21 374,744 80.45 68.74 19.55 31.26 323 1,102 6,290


[Footnotes]
Numbers presented are based on the total numbers from each organismal groups.
% non-TM proteins: % proteins predicted to have no (0) TM region.
% TM proteins: % proteins predicted to have at least one (>0) TM regions.
6 classifiers: the total number of 7TMR candidates by taking the intersection of the positive sets predicted by LDA, QDA, KNN20, SVM_AA, SVM_di and PLS_ACC


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[Last updated: 7/16/2012]