7TMRmine — a hierarchical mining tool for 7TMRs — Home Introduction Methods Summary Stats Links Transmembrane Protein Prediction Statistics: Plants Phobius Genome No. of proteins No. of TM regions Signal peptide 0 1 2-4 5-10 >10 Arabidopsis lyrata 32669 25739 3578 1695 1176 481 4979 Arabidopsis thaliana 35251 27396 3897 1860 1501 597 5597 Brachypodium distachyon 30992 24391 3223 1493 1335 550 6231 Cucumis sativus 30296 23372 3372 1651 1413 488 3498 Glycine max 55784 41957 6693 3616 2661 857 6986 Manihot esculenta 45901 36938 4691 2308 1453 511 4484 Mimulus guttatus 28281 22187 2912 1482 1243 457 3502 Oryza sativa 66317 54918 5840 3101 1820 638 10372 Populus trichocarpa 45022 34602 5472 2565 1754 629 6165 Sorghum bicolor 29448 23218 2977 1411 1315 527 5993 Vitis vinifera 25781 19056 3316 1926 1057 426 3128 Zea mays 63103 50679 6426 3225 2135 638 10330 Physcomitrella patens ssp patens 38060 30790 3708 1842 1278 442 4782 Selaginella moellendorffii 22285 18434 1723 1008 802 318 2692 Bigelowiella natans CCMP2755 21708 16849 2101 1467 1115 176 2930 Chlamydomonas reinhardtii 16688 13904 1195 858 577 154 2261 Chlorella NC64A 9791 7953 694 516 506 122 1548 Coccomyxa sp C-169 9629 7797 697 525 462 148 1116 Guillardia theta 24840 20452 1972 1106 1095 215 3739 Micromonas pusilla CCMP1545 10672 8958 691 512 413 98 1434 Micromonas strain RCC299 10107 8200 753 549 467 138 1198 Ostreococcus lucimarinus 7651 6326 501 376 356 92 621 Ostreococcus RCC809 7490 6131 537 377 340 105 595 Ostreococcus tauri 7725 6436 517 360 340 72 577 Volvox carteri 15285 12212 1424 962 543 144 1878 HMMTOP Genome No. of proteins No. of TM regions 0 1 2-4 5-10 >10 Arabidopsis lyrata 32669 19331 7760 3732 1273 573 Arabidopsis thaliana 35251 20071 8797 4072 1617 694 Brachypodium distachyon 30992 16207 8825 3892 1416 652 Cucumis sativus 30296 17636 6921 3631 1530 578 Glycine max 55784 31938 12421 7527 2862 1036 Manihot esculenta 45901 29167 9432 5097 1569 636 Mimulus guttatus 28281 16816 6318 3275 1310 562 Oryza sativa 66317 38482 16965 8044 2013 813 Populus trichocarpa 45022 26424 10163 5797 1862 776 Sorghum bicolor 29448 15532 8261 3607 1418 630 Vitis vinifera 25781 14614 5824 3643 1208 492 Zea mays 63103 36708 16082 7203 2312 798 Physcomitrella patens ssp patens 38060 24124 8203 3824 1406 503 Selaginella moellendorffii 22285 13831 4712 2484 872 386 Bigelowiella natans CCMP2755 21708 12693 4824 2700 1270 221 Chlamydomonas reinhardtii 16688 11013 3111 1765 612 187 Chlorella NC64A 9791 6235 1838 1037 527 154 Coccomyxa sp C-169 9629 5986 1947 1016 482 198 Guillardia theta 24840 16379 4934 2116 1162 249 Micromonas pusilla CCMP1545 10672 7332 1696 1042 467 135 Micromonas strain RCC299 10107 6663 1740 1018 500 186 Ostreococcus lucimarinus 7651 5127 1328 694 373 129 Ostreococcus RCC809 7490 5001 1291 695 370 133 Ostreococcus tauri 7725 5258 1325 684 365 93 Volvox carteri 15285 9058 3451 1996 616 164 Combined Results Genome No. of proteins No. of TM regions (Phobius, HMMTOP) (0, 0) (>0, >0) (0, 1) (0, >0) (1,0) (>0,0) Arabidopsis lyrata 32669 18961 6560 5501 6778 316 370 Arabidopsis thaliana 35251 19657 7441 6363 7739 361 414 Brachypodium distachyon 30992 15890 6284 6901 8501 280 317 Cucumis sativus 30296 17262 6550 4807 6110 344 374 Glycine max 55784 31071 12960 8436 10886 750 867 Manihot esculenta 45901 28684 8480 6458 8254 428 483 Mimulus guttatus 28281 16536 5814 4466 5651 239 280 Oryza sativa 66317 37653 10570 13662 17265 744 829 Populus trichocarpa 45022 25788 9784 6929 8814 561 636 Sorghum bicolor 29448 15200 5898 6555 8018 304 332 Vitis vinifera 25781 14177 6288 3764 4879 371 437 Zea mays 63103 35948 11664 11960 14731 681 760 Physcomitrella patens ssp patens 38060 23723 6869 5694 7067 359 401 Selaginella moellendorffii 22285 13540 3560 3733 4894 264 291 Bigelowiella natans CCMP2755 21708 12425 4591 3413 4424 232 268 Chlamydomonas reinhardtii 16688 10712 2483 2432 3192 227 301 Chlorella NC64A 9791 6070 1673 1458 1883 127 165 Coccomyxa sp C-169 9629 5890 1736 1485 1907 86 96 Guillardia theta 24840 16084 4093 3594 4368 255 295 Micromonas pusilla CCMP1545 10672 7176 1558 1320 1782 139 156 Micromonas strain RCC299 10107 6532 1776 1292 1668 119 131 Ostreococcus lucimarinus 7651 5040 1238 1008 1286 81 87 Ostreococcus RCC809 7490 4923 1281 933 1208 68 78 Ostreococcus tauri 7725 5185 1216 996 1251 70 73 Volvox carteri 15285 8777 2792 2604 3435 223 281 [Last updated: 7/16/2012]