Bioinformatics Resourses and Links
Contact Us
Go to:
Resources at UNL Societies Journals Centers Tools Databases
Genome Projects Domain DBs Structure DBs Transmembrane Prediction Other

Bioinformatics Related Resources at University of Nebraska
  Bioinformatics Core Facility
  Biocore Web (Bioinformatics Core Facility Web server)
  Nebraska Informatics Center for the Life Sciences (NICLS)
  Research Computing Facility (RCF) [the home of Prairiefire]
  Structure Biology Core Facility
  University of Nebraska Medical Center: Genetic Sequence Analysis Facility (GSAF)
  University of Nebraska Medical Center: Biomolecular Informatics Server (BiMS)
  University of Nebraska Medical Center: Molecular Modeling Core Facility
return to top
Meetings, Conferences, and Related Societies
  Research in Computational Molecular Biology
( RECOMB 2008, March 30 - April 2, 2008, at National Univeristy of Singapore )
  The International Society for Computational Biology
( ISMB 2008, July 19 - 23, at Toronto, Canada )
( ISMB/ECCB 2007, July 21 - 25, 2007, at Vienna, Austria )
  The Society for Molecular Biology and Evolution
( SMBE 2008, June 05 - 08, at Barcelona, Spain )
( SMBE 2007, June 24 - 28, 2007, at Halifax, Nova Scotia, Canada )
  The 11th World Multi-Conference on Systemics, Cybernetics and Informatics
(July 08-11, 2007, at Orlando, Florida)
  The World Congress in Computer Science, Computer Engineering, and Applied Computing
( WORLDCOMP'07, June 25 - 28, 2007, at Las Vegas, Nevada )
  The International Congress of Genetics
( 2008 Congress, July 12 - 17, 2008, at Berlin, Germany)
  The Genetics Society of America
return to top
Journals (these journals frequently publish bioinformatics related articles)
  Algorithms for Molecular Biology
  BMC Bioinformatics
  BMC Evolutionary Biology
  BMC Genomics
  Briefings in Bioinformatics
  Briefings in Functional Genomics & Proteomics
  Evolutionary Bioinformatics
  Genome Research
  Genome Biology
  Genomics, Proteomics & Bioinformatics
  In Silico Biology
  Journal of Computational Biology
  Journal of Molecular Biology
  Journal of Proteome Research
  Nucleic Acids Research
  PLoS Computation Biology
  PLoS Genetics
  Protein Engineering, Design and Selection
  Protein Science
  Proteins: Structure, Function and Bioinformatics
  Molecular Biology and Evolution
  Journal of Molecular Evolution
return to top
Bioinformatics Centers and Groups Around the World
  CBS (Center for Biological Sequence Analysis) at Technical University of Denmark
  Computational Biology at UC Santa Cruz
  Oxford University Bioinformatics Centre
  MIPS (Munich Information Center for Protein Sequences)
  Pôle Bio-Informatique Lyonnais
The European Bioinformatics Institute (EBI)
The National Center for Biotechnology Information (NCBI)
University of Oxford, Mathematical Genetics and Bioinformatics
return to top
Bioinformatics Tools
  Bioinformatics Web: IU Center for Genomics & Bioinformatics
  CMS MBR (CMS Molecular Biology Resource)
  ExPASy - Proteomics Tools
  Institut Pasteur, Biological Software list
  MolBiol.Net - Molecular Biology & Bioinformatics
  The European Bioinformatics Institute (EBI) Toolbox
  PHYLIP: Programs for inferring phylogenies
  Bioinformatics Perl Script Library at
return to top
  ExPASy - SWISS-PROT and TrEMBL protein databases
  NCBI Databases and Entrez
  Protein Information Resource (PIR) Database Information (PIR-PDS, iProClass, PIR-NREF)
  The European Bioinformatics Institute (EBI) Databases
return to top
Genome Projects and Databases
  Berkeley Drosophila Genome Project (BDGP)
  Broad Institute of MIT and Harvard
  euGenes: Genomic Information for Eukaryotic Organisms
  Fungal Genome Resources at Fungal Genetics Stock Center
  GOLD: Genomes OnLine Database
  Human Genome Project and Other Genome Programs at DOE
  NCBI Genomic Biology
  The Arabidopsis Information Resource
  J. Craig Venter Institute (formerly The Institute for Genomic Research: TIGR)
  The Sanger Centre Genome Projects
return to top
Protein Domain and Family Databases and Tools
  Blocks WWW Server
  EMBL-EBI: InterPro
  iProClass: An Integrated Protein Classification Database
  MEME/MAST: Motif Discovery and Search
  Pfam (Database of protein domain and HMMs)
  PRINTS (Protein Fingerprint Database)
  The Protein Domain Database (ProDom)
  SAM: Sequence Alignment and Modeling System
  TIGRFAMs (TIGR Protein Families)
return to top
Protein Structure Databases and Tools
  CATH - Protein Structure Classification
  DALI: Protein Structure Comparison by Diatance Matrix Alignment
  FSSP: Fold Classification based on Structure-Structure alignment of Proteins
  FUGUE: Sequence-structure homology recognition
  HOMSTRAD: Homologous Structure Alignment Database
  NCBI Structure Group
  PDB: Protein Data Bank
  PDBsum: A database of the known 3D structures of proteins and nucleic acids
  Phyre: Protein Homology/analogY Recognition Engine
  SCOP: Structural Classification of Proteins
  Structural Bioinformatics Servers at Imperial College London
return to top
Transmembrane Prediction
  SOSUI WWW Server
  TMHMM server
  TMpred Server
return to top
Other Resources
  BioMed Central
  Genome News Network
return to top