| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P53064 | 558 | RTF1_YEAST RNA polymerase-associated protein ... | 586 | 0 | 573 | 55 | 72 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0035327; C:transcriptionally active chromatin; IDA:SGD. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0001076; F:RNA polymerase II transcription factor binding transcription factor activity; IPI:SGD. | | | | | | | | | | GO:0070911; P:global genome nucleotide-excision repair; IMP:SGD.::GO:0016570; P:histone modification; IEA:InterPro.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:SGD.::GO:2001165; P:positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues; IMP:SGD.::GO:2001209; P:positive regulation of transcription elongation from RNA polymerase I promoter; IDA:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0034402; P:recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex; IMP:SGD.::GO:0031938; P:regulation of chromatin silencing at telomere; IMP:SGD.::GO:2001173; P:regulation of histone H2B conserved C-terminal lysine ubiquitination; IDA:SGD.::GO:0051569; P:regulation of histone H3-K4 methylation; IMP:SGD.::GO:2001160; P:regulation of histone H3-K79 methylation; IMP:SGD.::GO:0031126; P:snoRNA 3'-end processing; IMP:SGD.::GO:0001015; P:snoRNA transcription from an RNA polymerase II promoter; IMP:SGD.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 2 | O94667 | 560 | RTF1_SCHPO RNA polymerase-associated protein ... | 503 | 2e-39 | 155 | 31 | 50 | GO:0016593; C:Cdc73/Paf1 complex; ISS:PomBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro. | | | | | | | | | | GO:0016571; P:histone methylation; ISS:PomBase.::GO:0016574; P:histone ubiquitination; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:PomBase.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 3 | Q5RAD5 | 665 | RTF1_PONAB RNA polymerase-associated protein ... | 259 | 4e-17 | 88.6 | 25 | 50 | GO:0016593; C:Cdc73/Paf1 complex; ISS:UniProtKB. | | | | | | | | | | GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0001711; P:endodermal cell fate commitment; ISS:UniProtKB.::GO:0016570; P:histone modification; IEA:InterPro.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0019827; P:stem cell maintenance; ISS:UniProtKB.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 4 | Q92541 | 710 | RTF1_HUMAN RNA polymerase-associated protein ... | 259 | 6e-17 | 88.2 | 25 | 50 | GO:0016593; C:Cdc73/Paf1 complex; IDA:UniProtKB. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB. | | | | | | | | | | GO:0001711; P:endodermal cell fate commitment; ISS:UniProtKB.::GO:0016570; P:histone modification; IEA:InterPro.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0019827; P:stem cell maintenance; IDA:UniProtKB.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 5 | A2AQ19 | 715 | RTF1_MOUSE RNA polymerase-associated protein ... | 259 | 6e-17 | 88.2 | 25 | 50 | GO:0016593; C:Cdc73/Paf1 complex; ISS:UniProtKB.::GO:0005730; C:nucleolus; IDA:MGI. | | | | | | | | | | GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0001711; P:endodermal cell fate commitment; IMP:UniProtKB.::GO:0080182; P:histone H3-K4 trimethylation; IMP:UniProtKB.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:UniProtKB.::GO:0051571; P:positive regulation of histone H3-K4 methylation; IMP:UniProtKB.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0019827; P:stem cell maintenance; IMP:UniProtKB.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 6 | Q9W261 | 775 | RTF1_DROME RNA polymerase-associated protein ... | 276 | 0.0000000000009 | 75.1 | 25 | 48 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:InterPro.::GO:0042800; F:histone methyltransferase activity (H3-K4 specific); IMP:UniProtKB. | | | | | | | | | | GO:0007219; P:Notch signaling pathway; IMP:UniProtKB.::GO:0051571; P:positive regulation of histone H3-K4 methylation; IMP:FlyBase.::GO:0045747; P:positive regulation of Notch signaling pathway; IGI:FlyBase.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IMP:FlyBase.::GO:0006352; P:transcription initiation, DNA-dependent; IEA:InterPro. | 7 | O74839 | 1011 | YC1B_SCHPO Uncharacterized MscS family protei... | 149 | 3 | 34.7 | 27 | 46 | GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005509; F:calcium ion binding; NAS:PomBase. | | | | | | | | | | GO:0033554; P:cellular response to stress; IEP:PomBase.::GO:0055085; P:transmembrane transport; IEA:InterPro. | 8 | Q9NDJ2 | 3198 | DOM_DROME Helicase domino OS=Drosophila melan... | 81 | 4.8 | 33.9 | 31 | 49 | GO:0016585; C:chromatin remodeling complex; ISS:FlyBase.::GO:0035267; C:NuA4 histone acetyltransferase complex; IDA:UniProtKB. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008094; F:DNA-dependent ATPase activity; ISS:FlyBase.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0070983; P:dendrite guidance; IMP:FlyBase.::GO:0016458; P:gene silencing; IGI:FlyBase.::GO:0030097; P:hemopoiesis; TAS:FlyBase.::GO:0016573; P:histone acetylation; IDA:UniProtKB.::GO:0043486; P:histone exchange; IDA:UniProtKB.::GO:0002165; P:instar larval or pupal development; IMP:FlyBase.::GO:0035207; P:negative regulation of hemocyte proliferation; TAS:FlyBase.::GO:0048477; P:oogenesis; IMP:FlyBase.::GO:0045747; P:positive regulation of Notch signaling pathway; IGI:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0035222; P:wing disc pattern formation; IGI:FlyBase. | 9 | P35817 | 686 | BDF1_YEAST Bromodomain-containing factor 1 OS... | 42 | 7 | 33.5 | 48 | 67 | GO:0000812; C:Swr1 complex; IDA:SGD. | | | | | | | | | | GO:0003682; F:chromatin binding; IDA:SGD.::GO:0001047; F:core promoter binding; IDA:SGD.::GO:0070577; F:histone acetyl-lysine binding; IDA:SGD.::GO:0001094; F:TFIID-class transcription factor binding; IDA:SGD. | | | | | | | | | | GO:0006338; P:chromatin remodeling; IPI:SGD.::GO:0006281; P:DNA repair; IMP:SGD.::GO:0031452; P:negative regulation of heterochromatin assembly; IMP:SGD.::GO:1900051; P:positive regulation of histone exchange; IMP:SGD.::GO:0090054; P:regulation of chromatin silencing at silent mating-type cassette; IMP:SGD.::GO:0031938; P:regulation of chromatin silencing at telomere; IMP:SGD.::GO:0034401; P:regulation of transcription by chromatin organization; IMP:SGD.::GO:0009301; P:snRNA transcription; IMP:SGD.::GO:0030435; P:sporulation resulting in formation of a cellular spore; IEA:UniProtKB-KW. |
