Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR182W
Length:
86
Number of sequences:
5887
Description:
YPR182W SMX3 SGDID:S000006386, Chr XVI from 900194-900454, Genome Release 64-1-1, Verified ORF, "Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61P62305    92   RUXE_MOUSE Small nuclear ribonucleoprotein E ...480.37     30.8     31     56GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
62P62304    92   RUXE_HUMAN Small nuclear ribonucleoprotein E ...480.37     30.8     31     56GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005683; C:U7 snRNP; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.::GO:0034660; P:ncRNA metabolic process; TAS:Reactome.::GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
63P62303    92   RUXE_CHICK Small nuclear ribonucleoprotein E ...480.37     30.8     31     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
64A4FUI2    92   RUXE_BOVIN Small nuclear ribonucleoprotein E ...480.37     30.8     31     56GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
65P34574    1681   CLH_CAEEL Probable clathrin heavy chain 1 OS=...490.64     31.6     35     55GO:0016324; C:apical plasma membrane; IDA:WormBase.::GO:0030132; C:clathrin coat of coated pit; IEA:InterPro.::GO:0030130; C:clathrin coat of trans-Golgi network vesicle; IEA:InterPro.::GO:0045334; C:clathrin-coated endocytic vesicle; IDA:WormBase.::GO:0009898; C:internal side of plasma membrane; IDA:WormBase.
GO:0005488; F:binding; IEA:InterPro.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0006886; P:intracellular protein transport; IEA:InterPro.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0030163; P:protein catabolic process; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.
66P57743    89   LSM3_YEAST U6 snRNA-associated Sm-like protei...690.86     30     33     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
67Q10013    126   SMD1_CAEEL Probable small nuclear ribonucleop...640.87     30.4     33     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0043186; C:P granule; IDA:WormBase.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0007281; P:germ cell development; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
68O35900    95   LSM2_MOUSE U6 snRNA-associated Sm-like protei...381.9     29.3     45     55GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0019901; F:protein kinase binding; IDA:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
69Q9Y333    95   LSM2_HUMAN U6 snRNA-associated Sm-like protei...381.9     29.3     45     55GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
70Q8ZYE5    310   MOAA_PYRAE Probable molybdenum cofactor biosy...742.2     29.6     30     45GO:0019008; C:molybdopterin synthase complex; IEA:InterPro.
GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.::GO:0003824; F:catalytic activity; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006777; P:Mo-molybdopterin cofactor biosynthetic process; IEA:UniProtKB-KW.
71Q55EX5    97   LSM5_DICDI Probable U6 snRNA-associated Sm-li...622.7     28.9     27     50GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
72Q7ZUG0    92   RUXE_DANRE Small nuclear ribonucleoprotein E ...483     28.5     29     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
73Q54KX4    177   LSM4_DICDI Probable U6 snRNA-associated Sm-li...743.1     29.3     28     47GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
74Q9CNG4    355   DPO4_PASMU DNA polymerase IV OS=Pasteurella m...513.5     29.3     41     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003684; F:damaged DNA binding; IEA:InterPro.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
records
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