Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR182W
Length:
86
Number of sequences:
5887
Description:
YPR182W SMX3 SGDID:S000006386, Chr XVI from 900194-900454, Genome Release 64-1-1, Verified ORF, "Core Sm protein Sm F; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Sme1p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm F"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q552U1    88   LSM6_DICDI Probable U6 snRNA-associated Sm-li...680.000001     46.2     40     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
32O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...790.000001     46.2     42     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
33Q0UWI9    89   LSM6_PHANO U6 snRNA-associated Sm-like protei...680.000004     44.7     37     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
34Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...670.00001     43.1     39     55GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
35A8NHT8    95   LSM6_COPC7 U6 snRNA-associated Sm-like protei...490.00002     42.7     43     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
36Q6CPS7    80   LSM6_KLULA U6 snRNA-associated Sm-like protei...700.00005     41.2     36     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
37P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...720.00006     41.2     33     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
38Q75BR7    85   LSM6_ASHGO U6 snRNA-associated Sm-like protei...840.00006     41.2     35     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
39Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...670.0002     39.7     33     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
40Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...670.0003     38.9     36     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
41Q0W8R9    72   RUXX_UNCMA Putative snRNP Sm-like protein OS=...670.0006     38.1     36     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
42Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...670.002     36.6     34     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
43P38203    95   LSM2_YEAST U6 snRNA-associated Sm-like protei...690.002     37     39     55GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
44Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...670.002     36.6     34     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
45O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...750.003     36.2     33     48GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
46C6A1T2    76   RUXX_THESM Putative snRNP Sm-like protein OS=...460.005     35.4     39     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
47Q9Y4Z0    139   LSM4_HUMAN U6 snRNA-associated Sm-like protei...690.006     36.2     36     49GO:0005829; C:cytosol; TAS:Reactome.::GO:0005688; C:U6 snRNP; TAS:ProtInc.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:ProtInc.
48Q3ZBK6    139   LSM4_BOVIN U6 snRNA-associated Sm-like protei...690.006     36.2     36     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
49Q9QXA5    137   LSM4_MOUSE U6 snRNA-associated Sm-like protei...690.009     35.8     36     49GO:0005737; C:cytoplasm; ISS:MGI.::GO:0005654; C:nucleoplasm; ISS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
50P43321    101   SMD3_YEAST Small nuclear ribonucleoprotein Sm...590.024     34.3     34     59GO:0000243; C:commitment complex; IPI:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003729; F:mRNA binding; IPI:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
51Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...450.032     33.5     40     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
52O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...450.037     33.1     40     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
53B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...450.067     32.7     40     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
54Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...450.074     32.3     38     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
55O42661    117   SMD1_SCHPO Small nuclear ribonucleoprotein Sm...630.075     33.1     35     46GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
56Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...450.085     32.3     40     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
57Q9VLV5    94   RUXE_DROME Probable small nuclear ribonucleop...760.13     32.3     36     51GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
58O14352    121   LSM4_SCHPO Probable U6 snRNA-associated Sm-li...690.18     32.3     35     45GO:0005829; C:cytosol; IDA:PomBase.::GO:0005730; C:nucleolus; ISS:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
59C5A1H1    76   RUXX_THEGJ Putative snRNP Sm-like protein OS=...450.31     30.8     36     56GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
60A1XQR9    92   RUXE_PIG Small nuclear ribonucleoprotein E OS...480.36     31.2     31     56GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
61P62305    92   RUXE_MOUSE Small nuclear ribonucleoprotein E ...480.37     30.8     31     56GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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