Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR163C
Length:
436
Number of sequences:
5887
Description:
YPR163C TIF3 SGDID:S000006367, Chr XVI from 869955-868645, Genome Release 64-1-1, reverse complement, Verified ORF, "Translation initiation factor eIF-4B, has RNA annealing activity; contains an RNA recognition motif and binds to single-stranded RNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P34167    436   IF4B_YEAST Eukaryotic translation initiation ...4360     872     100     100GO:0005840; C:ribosome; TAS:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033592; F:RNA strand annealing activity; IDA:SGD.::GO:0003743; F:translation initiation factor activity; ISS:SGD.
GO:0002181; P:cytoplasmic translation; IMP:SGD.
2O14369    388   SCE3_SCHPO Probable RNA-binding protein sce3 ...1960.0000000006     64.3     26     42GO:0005829; C:cytosol; IDA:PomBase.::GO:0005840; C:ribosome; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:PomBase.
GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.
3P23588    611   IF4B_HUMAN Eukaryotic translation initiation ...870.00003     50.1     32     53GO:0005829; C:cytosol; TAS:Reactome.::GO:0016281; C:eukaryotic translation initiation factor 4F complex; TAS:ProtInc.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003743; F:translation initiation factor activity; TAS:ProtInc.
GO:0008286; P:insulin receptor signaling pathway; TAS:Reactome.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006446; P:regulation of translational initiation; TAS:ProtInc.
4Q8BGD9    611   IF4B_MOUSE Eukaryotic translation initiation ...870.0001     47.8     31     53
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
5Q15056    248   IF4H_HUMAN Eukaryotic translation initiation ...960.0003     46.2     28     51GO:0005829; C:cytosol; TAS:Reactome.::GO:0016281; C:eukaryotic translation initiation factor 4F complex; TAS:ProtInc.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003743; F:translation initiation factor activity; TAS:ProtInc.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006446; P:regulation of translational initiation; TAS:ProtInc.
6Q5RBR8    228   IF4H_PONAB Eukaryotic translation initiation ...1510.0003     45.8     28     44GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
7Q9WUK2    248   IF4H_MOUSE Eukaryotic translation initiation ...960.0003     45.8     28     51GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
8Q5XI72    248   IF4H_RAT Eukaryotic translation initiation fa...960.0003     45.8     28     51GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
9Q8IIG7    1070   YPF05_PLAF7 Uncharacterized protein PF11_0207...2170.0008     45.4     23     39GO:0005737; C:cytoplasm; NAS:UniProtKB.::GO:0016020; C:membrane; NAS:UniProtKB.
10Q1JPH6    228   IF4H_BOVIN Eukaryotic translation initiation ...960.0009     44.3     28     51GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
11P50109    593   PSP2_YEAST Protein PSP2 OS=Saccharomyces cere...2010.005     42.7     26     41GO:0005737; C:cytoplasm; IDA:SGD.
12P19682    276   ROC3_NICSY 28 kDa ribonucleoprotein, chloropl...1010.03     39.7     35     48GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
13Q61474    362   MSI1H_MOUSE RNA-binding protein Musashi homol...950.11     38.1     33     51GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005634; C:nucleus; IDA:MGI.::GO:0005844; C:polysome; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.
14Q8K3P4    362   MSI1H_RAT RNA-binding protein Musashi homolog...950.11     38.1     33     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030855; P:epithelial cell differentiation; IEP:RGD.::GO:0009725; P:response to hormone stimulus; IMP:RGD.
15O43347    362   MSI1H_HUMAN RNA-binding protein Musashi homol...950.11     38.1     33     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0007399; P:nervous system development; TAS:ProtInc.
16Q04836    329   ROC3_ARATH 31 kDa ribonucleoprotein, chloropl...1820.28     37     29     43GO:0009941; C:chloroplast envelope; IDA:TAIR.::GO:0009570; C:chloroplast stroma; IDA:TAIR.::GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:TAIR.
GO:0045087; P:innate immune response; IDA:TAIR.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0009451; P:RNA modification; IMP:TAIR.
17P19683    315   ROC4_NICSY 31 kDa ribonucleoprotein, chloropl...980.36     36.6     32     48GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
18P28644    233   ROC1_SPIOL 28 kDa ribonucleoprotein, chloropl...920.45     35.8     32     49GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
19Q96DH6    328   MSI2H_HUMAN RNA-binding protein Musashi homol...881.4     34.7     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.
20Q920Q6    346   MSI2H_MOUSE RNA-binding protein Musashi homol...881.5     34.7     30     49GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005844; C:polysome; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.
GO:0048864; P:stem cell development; IMP:UniProtKB.
21P36196    767   ACES_CHICK Acetylcholinesterase OS=Gallus gal...992.6     34.3     31     43GO:0030424; C:axon; IBA:RefGenome.::GO:0030054; C:cell junction; IEA:UniProtKB-KW.::GO:0009986; C:cell surface; IBA:RefGenome.::GO:0030425; C:dendrite; IBA:RefGenome.::GO:0005788; C:endoplasmic reticulum lumen; IBA:RefGenome.::GO:0005615; C:extracellular space; IBA:RefGenome.::GO:0031594; C:neuromuscular junction; IBA:RefGenome.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.::GO:0045211; C:postsynaptic membrane; IBA:RefGenome.::GO:0042734; C:presynaptic membrane; IBA:RefGenome.
GO:0003990; F:acetylcholinesterase activity; IBA:RefGenome.::GO:0004091; F:carboxylesterase activity; IBA:RefGenome.
GO:0019695; P:choline metabolic process; IBA:RefGenome.::GO:0042135; P:neurotransmitter catabolic process; IEA:UniProtKB-KW.::GO:0050770; P:regulation of axonogenesis; IBA:RefGenome.::GO:0048814; P:regulation of dendrite morphogenesis; IBA:RefGenome.::GO:0007416; P:synapse assembly; IBA:RefGenome.::GO:0007271; P:synaptic transmission, cholinergic; IBA:RefGenome.
22P15625    503   SYFA_YEAST Phenylalanine--tRNA ligase alpha s...305.6     33.1     50     70GO:0009328; C:phenylalanine-tRNA ligase complex; IDA:SGD.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004826; F:phenylalanine-tRNA ligase activity; IMP:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0000049; F:tRNA binding; IEA:InterPro.
GO:0006432; P:phenylalanyl-tRNA aminoacylation; TAS:SGD.
23Q8IID4    5251   DYHC2_PLAF7 Dynein heavy chain-like protein P...736.4     33.1     27     59GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0030286; C:dynein complex; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0016887; F:ATPase activity; IEA:InterPro.::GO:0003777; F:microtubule motor activity; ISS:UniProtKB.
GO:0007018; P:microtubule-based movement; ISS:UniProtKB.
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