Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR129W
Length:
349
Number of sequences:
5887
Description:
YPR129W SCD6 SGDID:S000006333, Chr XVI from 792687-793736, Genome Release 64-1-1, Verified ORF, "Protein containing an Lsm domain; negatively regulates translation initiation via 48S preinitiation complex assembly; may bind RNA and have a role in RNA processing; overproduction suppresses null mutation in clathrin heavy chain gene CHC1"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P45978    349   SCD6_YEAST Protein SCD6 OS=Saccharomyces cere...3490     717     100     100GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0010494; C:cytoplasmic stress granule; IDA:SGD.
GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.::GO:0003729; F:mRNA binding; IDA:SGD.
GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0045947; P:negative regulation of translational initiation; IMP:SGD.::GO:0034063; P:stress granule assembly; IMP:SGD.
2Q8CGC4    385   LS14B_MOUSE Protein LSM14 homolog B OS=Mus mu...3456e-17     84.3     28     42GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
3Q9BX40    385   LS14B_HUMAN Protein LSM14 homolog B OS=Homo s...3483e-16     82.4     28     41GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
4Q498K9    380   L14BB_XENLA Protein LSM14 homolog B-B OS=Xeno...3469e-16     80.9     29     42GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
5Q566L7    382   LS14B_XENTR Protein LSM14 homolog B OS=Xenopu...3560.00000000004     67.4     28     39GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
6A0A8M2    471   L14AA_XENLA Protein LSM14 homolog A-A OS=Xeno...1030.0007     45.1     31     47GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0043234; C:protein complex; IPI:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0017151; F:DEAD/H-box RNA helicase binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0017148; P:negative regulation of translation; IMP:UniProtKB.
7Q9YH12    467   LSM14_PLEWA Protein LSM14 homolog OS=Pleurode...1050.0009     44.7     30     45GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0006417; P:regulation of translation; IC:UniProtKB.
8Q8AVJ2    471   L14AB_XENLA Protein LSM14 homolog A-B OS=Xeno...1030.001     44.3     30     47GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0017151; F:DEAD/H-box RNA helicase binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0017148; P:negative regulation of translation; ISS:UniProtKB.
9Q9HGL3    426   SUM2_SCHPO Protein sum2 OS=Schizosaccharomyce...850.002     43.5     35     48GO:0005737; C:cytoplasm; IDA:PomBase.
GO:0005515; F:protein binding; IPI:PomBase.::GO:0003723; F:RNA binding; ISS:PomBase.
GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:PomBase.
10Q8K2F8    462   LS14A_MOUSE Protein LSM14 homolog A OS=Mus mu...1050.002     43.5     35     44GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
11Q8ND56    463   LS14A_HUMAN Protein LSM14 homolog A OS=Homo s...1050.003     42.7     34     46GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
GO:0033962; P:cytoplasmic mRNA processing body assembly; IDA:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
12Q5R4R4    463   LS14A_PONAB Protein LSM14 homolog A OS=Pongo ...1050.003     43.1     35     44GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
13Q3MHF8    463   LS14A_BOVIN Protein LSM14 homolog A OS=Bos ta...1050.003     42.7     35     44GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.
GO:0033962; P:cytoplasmic mRNA processing body assembly; ISS:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
14Q6NVR8    469   LS14A_XENTR Protein LSM14 homolog A OS=Xenopu...1030.003     42.7     30     46GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0017151; F:DEAD/H-box RNA helicase binding; ISS:UniProtKB.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0017148; P:negative regulation of translation; ISS:UniProtKB.
15Q68FI1    422   L14BA_XENLA Protein LSM14 homolog B-A OS=Xeno...980.026     40     31     48GO:0030529; C:ribonucleoprotein complex; IPI:UniProtKB.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
16Q6ZUB1    1445   F75E1_HUMAN Protein FAM75E1 OS=Homo sapiens (...610.63     35.8     34     43GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
17Q6PFQ2    926   EIF3C_DANRE Eukaryotic translation initiation...391.9     34.3     46     64GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
18O65704    537   FBK83_ARATH Putative F-box/kelch-repeat prote...422     33.9     36     52
GO:0009409; P:response to cold; IMP:UniProtKB.
19Q29RM4    1237   ARGAL_BOVIN Rho guanine nucleotide exchange f...346.6     32.7     35     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005089; F:Rho guanyl-nucleotide exchange factor activity; IEA:InterPro.
GO:0035023; P:regulation of Rho protein signal transduction; IEA:InterPro.
20P12915    2175   POLG_BOVEV Genome polyprotein OS=Bovine enter...469.1     32.3     35     59GO:0044162; C:host cell cytoplasmic vesicle membrane; IEA:UniProtKB-SubCell.::GO:0016020; C:membrane; IEA:UniProtKB-KW.::GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.::GO:0005216; F:ion channel activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003724; F:RNA helicase activity; IEA:InterPro.::GO:0003968; F:RNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; IEA:InterPro.
GO:0030683; P:evasion by virus of host immune response; IEA:UniProtKB-KW.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.::GO:0018144; P:RNA-protein covalent cross-linking; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.::GO:0019079; P:viral genome replication; IEA:InterPro.
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