Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR112C
Length:
887
Number of sequences:
5887
Description:
YPR112C MRD1 SGDID:S000006316, Chr XVI from 751919-749256, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential conserved protein that is part of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
301Q44554    103   RBPB_NOSS1 Putative RNA-binding protein rbpB ...790.16     36.6     28     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
302Q03250    176   GRP7_ARATH Glycine-rich RNA-binding protein 7...520.16     38.1     38     62GO:0009507; C:chloroplast; IDA:TAIR.::GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.::GO:0005777; C:peroxisome; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0003690; F:double-stranded DNA binding; IDA:TAIR.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:TAIR.::GO:0003697; F:single-stranded DNA binding; IDA:TAIR.
GO:0007623; P:circadian rhythm; IEP:TAIR.::GO:0032508; P:DNA duplex unwinding; IDA:TAIR.::GO:0045087; P:innate immune response; IDA:TAIR.::GO:0006406; P:mRNA export from nucleus; IMP:TAIR.::GO:0010119; P:regulation of stomatal movement; IMP:TAIR.::GO:0046686; P:response to cadmium ion; IEP:TAIR.::GO:0009409; P:response to cold; IGI:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0010043; P:response to zinc ion; IEP:TAIR.::GO:0010501; P:RNA secondary structure unwinding; IDA:TAIR.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR.
303P08579    225   RU2B_HUMAN U2 small nuclear ribonucleoprotein...700.16     38.5     31     51GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005686; C:U2 snRNP; TAS:ProtInc.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
304Q93W34    415   RP45C_ARATH Polyadenylate-binding protein RBP...780.18     38.9     27     45GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
305Q60668    355   HNRPD_MOUSE Heterogeneous nuclear ribonucleop...990.19     38.9     27     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
306Q871A4    494   PPIL4_NEUCR Peptidyl-prolyl cis-trans isomera...1010.19     38.9     25     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006457; P:protein folding; IEA:UniProtKB-KW.
307O61374    348   SXL_CERCA Sex-lethal homolog OS=Ceratitis cap...1610.19     38.9     25     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
308P19339    354   SXL_DROME Protein sex-lethal OS=Drosophila me...1960.19     38.9     23     45GO:0043234; C:protein complex; IPI:FlyBase.
GO:0008083; F:growth factor activity; IDA:FlyBase.::GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; IDA:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:FlyBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; TAS:FlyBase.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0007549; P:dosage compensation; NAS:FlyBase.::GO:0019099; P:female germ-line sex determination; TAS:FlyBase.::GO:0019101; P:female somatic sex determination; TAS:FlyBase.::GO:0007281; P:germ cell development; TAS:FlyBase.::GO:0007446; P:imaginal disc growth; IMP:FlyBase.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0009994; P:oocyte differentiation; IDA:FlyBase.::GO:0007131; P:reciprocal meiotic recombination; TAS:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007541; P:sex determination, primary response to X:A ratio; TAS:FlyBase.::GO:0007548; P:sex differentiation; NAS:FlyBase.::GO:0007224; P:smoothened signaling pathway; IDA:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
309Q14576    367   ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapie...720.19     38.9     29     46
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
310Q14103    355   HNRPD_HUMAN Heterogeneous nuclear ribonucleop...990.2     38.5     27     47GO:0005829; C:cytosol; TAS:Reactome.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; NAS:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0042162; F:telomeric DNA binding; IDA:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0045893; P:positive regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0006401; P:RNA catabolic process; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
311P36629    517   U2AF2_SCHPO Splicing factor U2AF 59 kDa subun...720.2     38.9     29     49GO:0000243; C:commitment complex; IDA:PomBase.::GO:0005686; C:U2 snRNP; TAS:PomBase.
GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0030515; F:snoRNA binding; TAS:PomBase.
GO:0000349; P:generation of catalytic spliceosome for first transesterification step; IDA:PomBase.::GO:0000348; P:nuclear mRNA branch site recognition; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IMP:PomBase.
312Q60900    367   ELAV3_MOUSE ELAV-like protein 3 OS=Mus muscul...720.2     38.9     29     46
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.
313P0C1I2    315   PPIE_RHIO9 Peptidyl-prolyl cis-trans isomeras...870.2     38.5     28     52
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006457; P:protein folding; IEA:UniProtKB-KW.
314Q4P8R9    651   PABP_USTMA Polyadenylate-binding protein, cyt...940.21     38.9     27     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
315Q98SJ2    360   DAZP1_XENLA DAZ-associated protein 1 OS=Xenop...900.21     38.5     26     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.
316Q3ZCC5    190   RBM18_BOVIN Probable RNA-binding protein 18 O...820.21     37.7     30     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
317Q0V9L3    424   CELF4_XENTR CUGBP Elav-like family member 4 O...640.21     38.9     33     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
318Q4G055    515   RBM40_RAT RNA-binding protein 40 OS=Rattus no...950.21     38.9     36     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
319Q8VC70    383   RBMS2_MOUSE RNA-binding motif, single-strande...690.22     38.5     26     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
320Q9C5Z1    712   EIF3B_ARATH Eukaryotic translation initiation...730.22     38.9     34     53GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
321P30352    221   SRSF2_CHICK Serine/arginine-rich splicing fac...940.23     38.1     30     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
322Q9FVQ1    557   NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thalia...560.24     38.5     36     57GO:0005730; C:nucleolus; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010588; P:cotyledon vascular tissue pattern formation; IMP:TAIR.::GO:0000478; P:endonucleolytic cleavage involved in rRNA processing; IMP:TAIR.::GO:0048366; P:leaf development; IMP:TAIR.::GO:0010305; P:leaf vascular tissue pattern formation; IMP:TAIR.::GO:0080056; P:petal vascular tissue pattern formation; IMP:TAIR.::GO:0048364; P:root development; IMP:TAIR.::GO:0080057; P:sepal vascular tissue pattern formation; IMP:TAIR.
323O93235    166   CIRBA_XENLA Cold-inducible RNA-binding protei...920.24     37.4     29     49GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0070181; F:SSU rRNA binding; ISS:UniProtKB.::GO:0030371; F:translation repressor activity; ISS:UniProtKB.
GO:0016477; P:cell migration; IMP:UniProtKB.::GO:0007369; P:gastrulation; IMP:UniProtKB.::GO:0072004; P:kidney field specification; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; IMP:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; IMP:UniProtKB.::GO:0009409; P:response to cold; IEP:UniProtKB.::GO:0009411; P:response to UV; ISS:UniProtKB.::GO:0034063; P:stress granule assembly; ISS:UniProtKB.
324Q9CQI7    225   RU2B_MOUSE U2 small nuclear ribonucleoprotein...700.24     37.7     31     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
325Q10021    208   RSP5_CAEEL Probable splicing factor, arginine...770.25     37.7     29     55GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IMP:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.
326Q7SZT7    400   ELAV4_XENLA ELAV-like protein 4 OS=Xenopus la...740.25     38.5     31     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
327Q10355    219   YDB2_SCHPO Uncharacterized RNA-binding protei...730.25     37.7     30     52GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007126; P:meiosis; IEP:PomBase.
328P92966    356   RSP41_ARATH Arginine/serine-rich-splicing fac...740.25     38.5     30     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; NAS:TAIR.
329Q96LT9    517   RBM40_HUMAN RNA-binding protein 40 OS=Homo sa...770.25     38.5     38     58GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IC:UniProtKB.
330Q8CGC6    750   RBM28_MOUSE RNA-binding protein 28 OS=Mus mus...470.26     38.9     38     60GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
331A4QNI8    400   ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tr...740.26     38.5     31     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
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