Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR110C
Length:
335
Number of sequences:
5887
Description:
YPR110C RPC40 SGDID:S000006314, Chr XVI from 746835-745828, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase subunit AC40, common to RNA polymerase I and III"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P07703    335   RPAC1_YEAST DNA-directed RNA polymerases I an...3350     691     100     100GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.::GO:0005666; C:DNA-directed RNA polymerase III complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006360; P:transcription from RNA polymerase I promoter; IC:SGD.::GO:0042797; P:tRNA transcription from RNA polymerase III promoter; IDA:SGD.
2O94616    348   RPAC1_SCHPO DNA-directed RNA polymerases I an...3302e-132     388     57     74GO:0005829; C:cytosol; IDA:PomBase.::GO:0005736; C:DNA-directed RNA polymerase I complex; IGI:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; IGI:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0070317; P:negative regulation of G0 to G1 transition; IMP:PomBase.::GO:0006360; P:transcription from RNA polymerase I promoter; IGI:PomBase.::GO:0006383; P:transcription from RNA polymerase III promoter; IGI:PomBase.
3P52432    346   RPAC1_MOUSE DNA-directed RNA polymerases I an...3152e-105     319     47     69GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
4Q32L22    346   RPAC1_BOVIN DNA-directed RNA polymerases I an...3171e-104     317     47     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
5O15160    346   RPAC1_HUMAN DNA-directed RNA polymerases I an...3259e-104     315     46     67GO:0005736; C:DNA-directed RNA polymerase I complex; TAS:ProtInc.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.
6Q54SN4    345   RPAC1_DICDI DNA-directed RNA polymerases I an...3194e-66     218     41     59GO:0005736; C:DNA-directed RNA polymerase I complex; ISS:dictyBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006360; P:transcription from RNA polymerase I promoter; ISS:dictyBase.::GO:0006383; P:transcription from RNA polymerase III promoter; ISS:dictyBase.
7Q54DH7    302   RPB3_DICDI DNA-directed RNA polymerase II sub...3047e-34     131     32     50GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:dictyBase.
8P0CG28    266   RPOD_METAC DNA-directed RNA polymerase subuni...2941e-30     122     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
9Q39211    319   RPB3A_ARATH DNA-directed RNA polymerase II su...2991e-29     120     30     48GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.::GO:0000418; C:DNA-directed RNA polymerase IV complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
10Q39212    319   RPB3B_ARATH DNA-directed RNA polymerase II su...3102e-29     119     30     45GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
11Q96YW0    264   RPOD_SULTO DNA-directed RNA polymerase subuni...2912e-28     115     31     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
12O26144    264   RPOD_METTH DNA-directed RNA polymerase subuni...2814e-28     114     31     47
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
13Q8PV16    266   RPOD_METMA DNA-directed RNA polymerase subuni...2953e-27     112     29     47
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
14P39471    264   RPOD_SULAC DNA-directed RNA polymerase subuni...2773e-24     103     31     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
15P16925    310   CNJC_TETTH Conjugation stage-specific protein...3003e-24     104     28     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
16C3N8R8    265   RPOD_SULIY DNA-directed RNA polymerase subuni...2695e-24     103     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
17C3NMQ0    265   RPOD_SULIN DNA-directed RNA polymerase subuni...2695e-24     103     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
18C3MJP7    265   RPOD_SULIL DNA-directed RNA polymerase subuni...2695e-24     103     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
19C3MZ05    265   RPOD_SULIM DNA-directed RNA polymerase subuni...2696e-24     102     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
20C4KJ93    265   RPOD_SULIK DNA-directed RNA polymerase subuni...2696e-24     102     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
21C3N054    265   RPOD_SULIA DNA-directed RNA polymerase subuni...2696e-24     102     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
22Q8TVB8    275   RPOD_METKA DNA-directed RNA polymerase subuni...2866e-24     102     31     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
23Q9V198    259   RPOD_PYRAB DNA-directed RNA polymerase subuni...2787e-24     102     30     46
GO:0003677; F:DNA binding; IEA:HAMAP.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:HAMAP.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
24Q2NFZ6    270   RPOD_METST DNA-directed RNA polymerase subuni...2911e-23     102     28     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
25P95989    265   RPOD_SULSO DNA-directed RNA polymerase subuni...2673e-23     100     30     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
26O28002    264   RPOD_ARCFU DNA-directed RNA polymerase subuni...2837e-23     99.8     29     48
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0009055; F:electron carrier activity; IEA:InterPro.::GO:0051536; F:iron-sulfur cluster binding; IEA:InterPro.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
27A5UN55    274   RPOD_METS3 DNA-directed RNA polymerase subuni...2958e-23     99.8     27     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
28Q00813    259   RPOD_HALMA DNA-directed RNA polymerase subuni...3051e-22     99     28     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
29P37382    297   RPB3_SCHPO DNA-directed RNA polymerase II sub...2943e-22     98.6     29     47GO:0005829; C:cytosol; IDA:PomBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IMP:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.
30Q3T0Q3    275   RPB3_BOVIN DNA-directed RNA polymerase II sub...2943e-22     97.8     28     45GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
31O59303    259   RPOD_PYRHO DNA-directed RNA polymerase subuni...2806e-22     96.7     29     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
records
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