Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR110C
Length:
335
Number of sequences:
5887
Description:
YPR110C RPC40 SGDID:S000006314, Chr XVI from 746835-745828, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase subunit AC40, common to RNA polymerase I and III"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31O59303    259   RPOD_PYRHO DNA-directed RNA polymerase subuni...2806e-22     96.7     29     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
32P19387    275   RPB3_HUMAN DNA-directed RNA polymerase II sub...2937e-22     97.1     28     44GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.::GO:0015630; C:microtubule cytoskeleton; IDA:HPA.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
33P97760    275   RPB3_MOUSE DNA-directed RNA polymerase II sub...2923e-21     95.1     27     43GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
34Q3IQT6    247   RPOD_NATPD DNA-directed RNA polymerase subuni...2965e-21     94     27     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
35Q9HQJ4    248   RPOD_HALSA DNA-directed RNA polymerase subuni...2951e-20     93.2     27     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
36B0R4Y2    248   RPOD_HALS3 DNA-directed RNA polymerase subuni...2951e-20     93.2     27     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
37Q5JJF4    259   RPOD_PYRKO DNA-directed RNA polymerase subuni...2852e-20     92.4     28     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
38Q9YB53    286   RPOD_AERPE DNA-directed RNA polymerase subuni...2926e-20     91.3     28     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
39P16370    318   RPB3_YEAST DNA-directed RNA polymerase II sub...2926e-18     86.3     25     44GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD.
40B1YC30    262   RPOD_THENV DNA-directed RNA polymerase subuni...2663e-17     83.2     30     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
41Q97B93    271   RPOD_THEVO DNA-directed RNA polymerase subuni...2974e-17     83.2     26     46
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
42Q8U0E4    261   RPOD_PYRFU DNA-directed RNA polymerase subuni...2889e-17     82     28     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
43A1RSE3    262   RPOD_PYRIL DNA-directed RNA polymerase subuni...2732e-16     81.3     30     42
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
44Q9HJD9    271   RPOD_THEAC DNA-directed RNA polymerase subuni...3010.000000000000005     77.4     25     45
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
45Q8ZYQ3    260   RPOD_PYRAE DNA-directed RNA polymerase subuni...2700.00000000000001     75.9     31     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
46Q6KZP5    271   RPOD_PICTO DNA-directed RNA polymerase subuni...2950.0000000000009     70.9     26     42
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
47A4WNA4    259   RPOD_PYRAR DNA-directed RNA polymerase subuni...2750.000000000007     68.2     29     42
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
48A3MXZ5    258   RPOD_PYRCJ DNA-directed RNA polymerase subuni...2690.00000000001     67.4     30     44
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
49Q8K2V1    951   PP4R1_MOUSE Serine/threonine-protein phosphat...1211.5     34.7     26     44
GO:0005488; F:binding; IEA:InterPro.
50Q57648    191   RPOD_METJA DNA-directed RNA polymerase subuni...273.7     32.3     59     74
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
51Q88YL5    377   RF2_LACPL Peptide chain release factor 2 OS=L...698.1     32     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0016149; F:translation release factor activity, codon specific; IEA:InterPro.
records
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