Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR107C
Length:
208
Number of sequences:
5887
Description:
YPR107C YTH1 SGDID:S000006311, Chr XVI from 742064-741438, Genome Release 64-1-1, reverse complement, Verified ORF, "Essential RNA-binding component of cleavage and polyadenylation factor, contains five zinc fingers; required for pre-mRNA 3'-end processing and polyadenylation"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q9H0J9    701   PAR12_HUMAN Poly [ADP-ribose] polymerase 12 O...991.1     33.9     28     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003950; F:NAD+ ADP-ribosyltransferase activity; IEA:EC.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
62O17468    1047   HIRA_DROME Protein HIRA homolog OS=Drosophila...601.4     33.5     32     58GO:0001673; C:male germ cell nucleus; IDA:UniProtKB.
GO:0003682; F:chromatin binding; IDA:UniProtKB.
GO:0006336; P:DNA replication-independent nucleosome assembly; IMP:FlyBase.::GO:0035042; P:fertilization, exchange of chromosomal proteins; IMP:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
63Q9STM4    448   C3H43_ARATH Zinc finger CCCH domain-containin...731.9     32.7     27     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
64Q13434    485   MKRN4_HUMAN Putative E3 ubiquitin-protein lig...572.5     32.3     26     47
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
65Q9UPT8    1303   ZC3H4_HUMAN Zinc finger CCCH domain-containin...822.6     32.7     26     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
66Q640Q5    837   PAN3_MOUSE PAB-dependent poly(A)-specific rib...292.8     32.3     38     66
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004672; F:protein kinase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
67Q94AD9    404   C3H3_ARATH Zinc finger CCCH domain-containing...853.2     32.3     32     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
68Q8GXX7    397   C3H33_ARATH Zinc finger CCCH domain-containin...1353.2     32     26     39GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; TAS:TAIR.::GO:0048027; F:mRNA 5'-UTR binding; IPI:TAIR.::GO:0004518; F:nuclease activity; TAS:TAIR.::GO:0010313; F:phytochrome binding; IPI:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0017148; P:negative regulation of translation; IMP:TAIR.
69Q6AT25    493   C3H34_ORYSJ Zinc finger CCCH domain-containin...913.2     32.3     25     38
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
70Q58A45    887   PAN3_HUMAN PAB-dependent poly(A)-specific rib...293.4     32.3     38     66GO:0005813; C:centrosome; IDA:HPA.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005524; F:ATP binding; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004672; F:protein kinase activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.
71Q9SIV5    1773   C3H19_ARATH Zinc finger CCCH domain-containin...304     32     37     53
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
72Q9FKR9    472   C3H59_ARATH Zinc finger CCCH domain-containin...254.6     31.6     44     68
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
73Q8BZ20    711   PAR12_MOUSE Poly [ADP-ribose] polymerase 12 O...644.6     32     36     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003950; F:NAD+ ADP-ribosyltransferase activity; IEA:EC.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
74Q6ZPZ3    1304   ZC3H4_MOUSE Zinc finger CCCH domain-containin...824.7     32     26     45
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
75Q2R4J4    444   C3H63_ORYSJ Zinc finger CCCH domain-containin...1325.6     31.6     25     39
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
76Q2QTY2    529   C3H65_ORYSJ Zinc finger CCCH domain-containin...905.9     31.6     29     46
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
77Q7V8F2    446   GLMU_PROMM Bifunctional protein GlmU OS=Proch...606.5     31.2     38     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0019134; F:glucosamine-1-phosphate N-acetyltransferase activity; IEA:EC.::GO:0000287; F:magnesium ion binding; IEA:InterPro.::GO:0003977; F:UDP-N-acetylglucosamine diphosphorylase activity; IEA:EC.
GO:0000902; P:cell morphogenesis; IEA:InterPro.::GO:0007047; P:cellular cell wall organization; IEA:UniProtKB-KW.::GO:0009103; P:lipopolysaccharide biosynthetic process; IEA:InterPro.::GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-KW.::GO:0008360; P:regulation of cell shape; IEA:UniProtKB-KW.
78P41000    583   CPS3_SCHPO Protein cps3 OS=Schizosaccharomyce...526.8     31.2     31     52GO:0005829; C:cytosol; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0000226; P:microtubule cytoskeleton organization; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IMP:PomBase.
79Q9D256    87   ISK12_MOUSE Serine protease inhibitor Kazal-t...397.1     29.3     38     49GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0004867; F:serine-type endopeptidase inhibitor activity; IEA:UniProtKB-KW.
GO:0045861; P:negative regulation of proteolysis; IDA:MGI.
80O48772    453   C3H26_ARATH Zinc finger CCCH domain-containin...727.4     31.2     29     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; TAS:TAIR.::GO:0004518; F:nuclease activity; TAS:TAIR.::GO:0008270; F:zinc ion binding; IEA:InterPro.
81Q6NPN3    465   C3H58_ARATH Zinc finger CCCH domain-containin...877.7     31.2     26     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
82Q9UHC7    482   MKRN1_HUMAN E3 ubiquitin-protein ligase makor...468.1     30.8     33     48
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
83Q6K977    647   C3H19_ORYSJ Zinc finger CCCH domain-containin...1098.8     30.8     26     37
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
84Q9QXP6    481   MKRN1_MOUSE E3 ubiquitin-protein ligase makor...468.9     30.8     33     48
GO:0003682; F:chromatin binding; IDA:MGI.::GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
85Q8R205    435   ZC3HA_MOUSE Zinc finger CCCH domain-containin...1248.9     30.8     23     40
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
86Q5REG6    811   ZC11A_PONAB Zinc finger CCCH domain-containin...709     30.8     29     43
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
87Q96K80    434   ZC3HA_HUMAN Zinc finger CCCH domain-containin...1249.4     30.8     23     40
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
88Q8CHP0    950   ZC3H3_MOUSE Zinc finger CCCH domain-containin...479.5     30.8     38     45GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.::GO:0016973; P:poly(A)+ mRNA export from nucleus; ISS:UniProtKB.::GO:0010793; P:regulation of mRNA export from nucleus; ISS:UniProtKB.
89Q9DFG8    414   MKRN2_DANRE Probable E3 ubiquitin-protein lig...409.5     30.8     33     48GO:0005622; C:intracellular; ISS:UniProtKB.
GO:0016874; F:ligase activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007399; P:nervous system development; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
90Q8BL48    810   UNK_MOUSE RING finger protein unkempt homolog...529.5     30.8     29     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
91Q5Z807    390   C3H46_ORYSJ Zinc finger CCCH domain-containin...209.9     30.8     55     70
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
records
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