Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR094W
Length:
107
Number of sequences:
5887
Description:
YPR094W RDS3 SGDID:S000006298, Chr XVI from 720637-720960, Genome Release 64-1-1, Verified ORF, "Component of the SF3b subcomplex of the U2 snRNP, zinc cluster protein involved in pre-mRNA splicing and cycloheximide resistance"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q06835    107   RDS3_YEAST Pre-mRNA-splicing factor RDS3 OS=S...1071e-72     218     100     100GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:SGD.
GO:0009410; P:response to xenobiotic stimulus; IMP:SGD.::GO:0000245; P:spliceosomal complex assembly; IMP:SGD.
2Q9UTB8    117   INI1_SCHPO Pre-mRNA-splicing factor ini1 OS=S...1052e-37     128     55     73GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IDA:PomBase.
3Q0WMV8    110   PHF5B_ARATH PHD finger-like domain-containing...1051e-36     125     57     74
4P0DI19    110   PHF5A_ARATH PHD finger-like domain-containing...1051e-36     125     57     74
5P83871    110   PHF5A_RAT PHD finger-like domain-containing p...1053e-34     120     56     71GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6P83870    110   PHF5A_MOUSE PHD finger-like domain-containing...1053e-34     120     56     71GO:0016363; C:nuclear matrix; IDA:MGI.::GO:0016607; C:nuclear speck; IDA:UniProtKB.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7Q7RTV0    110   PHF5A_HUMAN PHD finger-like domain-containing...1053e-34     120     56     71GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.::GO:0005686; C:U2 snRNP; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; ISS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8Q9VMC8    111   PHF5_DROME Uncharacterized protein CG9548 OS=...1054e-33     117     55     70GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.
9P53776    390   LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus m...510.18     33.9     33     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006916; P:anti-apoptosis; IMP:MGI.::GO:0021526; P:medial motor column neuron differentiation; IGI:MGI.::GO:0008045; P:motor axon guidance; IGI:MGI.::GO:0009887; P:organ morphogenesis; IMP:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q969G2    390   LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo ...510.18     33.9     33     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11P53412    395   LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallu...860.46     32.7     30     38
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12Q8SQX2    707   SEC23_ENCCU Protein transport protein SEC23 O...350.92     31.6     43     57GO:0030127; C:COPII vesicle coat; IEA:InterPro.::GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell.
GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006888; P:ER to Golgi vesicle-mediated transport; IEA:InterPro.::GO:0006886; P:intracellular protein transport; IEA:InterPro.
13Q25132    692   LHX3_HALRO LIM/homeobox protein Lhx3 OS=Haloc...561.2     31.6     29     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
14P36200    395   LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenop...512.1     30.8     29     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q90421    398   LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio...512.8     30.4     27     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16O97581    383   LHX3_PIG LIM/homeobox protein Lhx3 OS=Sus scr...512.8     30.4     27     43GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; NAS:UniProtKB.
GO:0045893; P:positive regulation of transcription, DNA-dependent; IDA:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
17Q9UBR4    397   LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo ...513.2     30     27     43GO:0005634; C:nucleus; TAS:ProtInc.
GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0048839; P:inner ear development; IEP:UniProtKB.::GO:0009887; P:organ morphogenesis; TAS:ProtInc.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
18P50481    400   LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus m...513.6     30     27     43GO:0005667; C:transcription factor complex; IDA:MGI.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0000988; F:protein binding transcription factor activity; IPI:MGI.::GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0021526; P:medial motor column neuron differentiation; IGI:MGI.::GO:0008045; P:motor axon guidance; IGI:MGI.::GO:0043066; P:negative regulation of apoptotic process; IMP:MGI.::GO:0021983; P:pituitary gland development; IMP:MGI.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:MGI.::GO:0021527; P:spinal cord association neuron differentiation; IDA:MGI.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0021521; P:ventral spinal cord interneuron specification; IDA:MGI.
19Q54L00    650   LIMKA_DICDI Probable LIM domain-containing se...724.5     29.6     24     42
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
20P51559    943   BLI4_CAEEL Endoprotease bli-4 OS=Caenorhabdit...567.1     29.3     32     39GO:0016021; C:integral to membrane; NAS:UniProtKB.::GO:0005634; C:nucleus; IDA:WormBase.
GO:0004252; F:serine-type endopeptidase activity; NAS:UniProtKB.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0040002; P:collagen and cuticulin-based cuticle development; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
21Q39057    373   CONS_ARATH Zinc finger protein CONSTANS OS=Ar...588.3     28.9     28     45GO:0005634; C:nucleus; IDA:TAIR.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0010018; P:far-red light signaling pathway; IMP:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0009909; P:regulation of flower development; IMP:TAIR.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
22P97927    1816   LAMA4_MOUSE Laminin subunit alpha-4 OS=Mus mu...558.9     28.9     33     47GO:0005606; C:laminin-1 complex; IEA:InterPro.
GO:0005102; F:receptor binding; IEA:InterPro.
GO:0001568; P:blood vessel development; IMP:MGI.::GO:0050873; P:brown fat cell differentiation; IDA:MGI.::GO:0007155; P:cell adhesion; IEA:UniProtKB-KW.::GO:0030155; P:regulation of cell adhesion; IEA:InterPro.::GO:0030334; P:regulation of cell migration; IEA:InterPro.::GO:0045995; P:regulation of embryonic development; IEA:InterPro.
records
Previous ‹‹ ›› Next Total records: 22 1 - 22
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::