Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPR056W
Length:
338
Number of sequences:
5887
Description:
YPR056W TFB4 SGDID:S000006260, Chr XVI from 671126-672142, Genome Release 64-1-1, Verified ORF, "Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12004    338   TFB4_YEAST RNA polymerase II transcription fa...3380     696     100     100GO:0000439; C:core TFIIH complex; IDA:SGD.::GO:0005675; C:holo TFIIH complex; IDA:SGD.::GO:0000112; C:nucleotide-excision repair factor 3 complex; IPI:SGD.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006289; P:nucleotide-excision repair; IMP:SGD.::GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IDA:SGD.::GO:0006366; P:transcription from RNA polymerase II promoter; IDA:SGD.
2Q6FWA7    335   TFB4_CANGA RNA polymerase II transcription fa...3183e-168     479     70     84GO:0000439; C:core TFIIH complex; IEA:InterPro.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3Q75B93    341   TFB4_ASHGO RNA polymerase II transcription fa...3294e-168     479     68     83GO:0000439; C:core TFIIH complex; IEA:InterPro.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6CVX9    337   TFB4_KLULA RNA polymerase II transcription fa...3433e-148     428     60     77GO:0000439; C:core TFIIH complex; IEA:InterPro.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q6BL86    387   TFB4_DEBHA RNA polymerase II transcription fa...3831e-88     277     39     61GO:0000439; C:core TFIIH complex; IEA:InterPro.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q6CD24    340   TFB4_YARLI RNA polymerase II transcription fa...3418e-76     243     38     60GO:0000439; C:core TFIIH complex; IEA:InterPro.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7O74366    297   TFB4_SCHPO RNA polymerase II transcription fa...2931e-59     199     36     59GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005675; C:holo TFIIH complex; ISS:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006289; P:nucleotide-excision repair; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:PomBase.
8Q13889    308   TF2H3_HUMAN General transcription factor IIH ...2961e-36     139     30     50GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005675; C:holo TFIIH complex; IDA:UniProtKB.
GO:0003684; F:damaged DNA binding; NAS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0047485; F:protein N-terminus binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; NAS:UniProtKB.::GO:0008135; F:translation factor activity, nucleic acid binding; TAS:ProtInc.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
9Q05B56    309   TF2H3_BOVIN General transcription factor IIH ...3001e-36     139     31     50GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
10Q561R7    309   TF2H3_RAT General transcription factor IIH su...3021e-34     133     30     48GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
11Q8VD76    309   TF2H3_MOUSE General transcription factor IIH ...3029e-34     131     29     48GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
12Q86IB5    372   TF2H3_DICDI General transcription factor IIH ...2611e-28     118     33     53GO:0000439; C:core TFIIH complex; IEA:InterPro.::GO:0005675; C:holo TFIIH complex; ISS:dictyBase.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0007070; P:negative regulation of transcription from RNA polymerase II promoter during mitosis; ISS:dictyBase.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:dictyBase.
13P57823    494   AMPA_PASMU Probable cytosol aminopeptidase OS...1320.16     37.4     30     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0004177; F:aminopeptidase activity; IEA:UniProtKB-KW.::GO:0030145; F:manganese ion binding; IEA:InterPro.::GO:0008235; F:metalloexopeptidase activity; IEA:InterPro.
GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
14Q6ZWJ8    1503   KCP_HUMAN Kielin/chordin-like protein OS=Homo...481.9     34.3     42     50GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
15Q3U492    1550   KCP_MOUSE Kielin/chordin-like protein OS=Mus ...463.3     33.5     46     50GO:0005615; C:extracellular space; IDA:MGI.
GO:0005515; F:protein binding; IPI:MGI.
GO:0030513; P:positive regulation of BMP signaling pathway; IDA:MGI.
records
Previous ‹‹ ›› Next Total records: 15 1 - 15
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::