Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPL190C
Length:
802
Number of sequences:
5887
Description:
YPL190C NAB3 SGDID:S000006111, Chr XVI from 187725-185317, Genome Release 64-1-1, reverse complement, Verified ORF, "Single stranded RNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(A) transcripts and efficient splicing; interacts with Nrd1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P38996    802   NAB3_YEAST Nuclear polyadenylated RNA-binding...8020     1639     100     100GO:0035649; C:Nrd1 complex; IDA:SGD.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0001068; F:transcription regulatory region RNA binding; IDA:SGD.
GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IPI:SGD.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; IMP:SGD.
2Q10145    738   YAS9_SCHPO Uncharacterized RNA-binding protei...2830.000000000000002     84     27     43GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase.
GO:0033554; P:cellular response to stress; IEP:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:PomBase.::GO:0031123; P:RNA 3'-end processing; NAS:PomBase.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; ISS:PomBase.
3Q9Z204    313   HNRPC_MOUSE Heterogeneous nuclear ribonucleop...900.000000008     61.6     34     53GO:0045120; C:pronucleus; IDA:MGI.::GO:0005681; C:spliceosomal complex; ISS:HGNC.
GO:0003729; F:mRNA binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4Q5RA82    306   HNRPC_PONAB Heterogeneous nuclear ribonucleop...900.00000001     61.2     34     53
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5P07910    306   HNRPC_HUMAN Heterogeneous nuclear ribonucleop...900.00000001     61.2     34     53GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:HGNC.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
6O77768    306   HNRPC_RABIT Heterogeneous nuclear ribonucleop...900.00000001     61.2     34     53GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7P19600    282   HNRPC_XENLA Heterogeneous nuclear ribonucleop...900.00000001     60.5     34     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0038032; P:termination of G-protein coupled receptor signaling pathway; IEA:InterPro.
8O60812    293   HNRCL_HUMAN Heterogeneous nuclear ribonucleop...900.0000001     57.8     32     52GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
9Q13247    344   SRSF6_HUMAN Serine/arginine-rich splicing fac...680.000001     54.7     35     71GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
10Q3B7L6    345   SRSF6_BOVIN Serine/arginine-rich splicing fac...680.000003     53.9     37     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11P26686    376   SRR55_DROME Serine-arginine protein 55 OS=Dro...760.000003     53.9     36     61GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
12Q08170    494   SRSF4_HUMAN Serine/arginine-rich splicing fac...880.000004     53.9     31     60GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
13Q8VE97    489   SRSF4_MOUSE Serine/arginine-rich splicing fac...880.000004     53.9     31     60GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
14Q9UKM9    306   RALY_HUMAN RNA-binding protein Raly OS=Homo s...650.000008     52.4     35     55GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
15Q23121    312   RSP1_CAEEL Probable splicing factor, arginine...710.000008     52.4     35     65GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040026; P:positive regulation of vulval development; IMP:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; IGI:UniProtKB.
16Q64012    312   RALY_MOUSE RNA-binding protein Raly OS=Mus mu...650.00001     52     35     55
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
17Q9FYB7    284   RSZ32_ARATH Serine/arginine-rich splicing fac...840.00003     50.4     29     52
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:TAIR.
18Q8C2Q3    669   RBM14_MOUSE RNA-binding protein 14 OS=Mus mus...700.00004     50.8     29     56GO:0005667; C:transcription factor complex; ISS:UniProtKB.
GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0016575; P:histone deacetylation; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q5EA36    669   RBM14_BOVIN RNA-binding protein 14 OS=Bos tau...700.00004     50.8     29     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
20Q0VFL7    291   RALYL_XENTR RNA-binding Raly-like protein OS=...650.00004     49.7     34     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
21Q86SE5    291   RALYL_HUMAN RNA-binding Raly-like protein OS=...650.00005     49.7     35     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
22Q08DJ0    293   RALYL_BOVIN RNA-binding Raly-like protein OS=...650.00005     49.7     35     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
23P78814    365   SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=S...670.00005     50.1     27     57GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase.::GO:0046982; F:protein heterodimerization activity; IPI:PomBase.
GO:0006406; P:mRNA export from nucleus; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24Q8BTF8    293   RALYL_MOUSE RNA-binding Raly-like protein OS=...650.00006     49.3     35     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
25Q01560    414   NOP3_YEAST Nucleolar protein 3 OS=Saccharomyc...700.0003     47.8     34     53GO:0005737; C:cytoplasm; IMP:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0000993; F:RNA polymerase II core binding; IPI:SGD.
GO:0006406; P:mRNA export from nucleus; IGI:SGD.::GO:2000805; P:negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled; IDA:SGD.::GO:0017148; P:negative regulation of translation; IDA:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006415; P:translational termination; IMP:SGD.
26Q6PF35    489   CEL1B_XENLA CUGBP Elav-like family member 1-B...640.0004     47.4     38     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
27Q8VYA5    290   RSZ33_ARATH Serine/arginine-rich splicing fac...840.0006     46.2     27     50GO:0016607; C:nuclear speck; IDA:TAIR.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000245; P:spliceosomal complex assembly; TAS:TAIR.
28Q6DJI9    218   ZCRB1_XENLA Zinc finger CCHC-type and RNA-bin...860.0007     45.4     26     51GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
29O35326    270   SRSF5_MOUSE Serine/arginine-rich splicing fac...610.0008     45.8     38     62GO:0016607; C:nuclear speck; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
30Q09167    269   SRSF5_RAT Serine/arginine-rich splicing facto...600.0009     45.4     37     62GO:0016607; C:nuclear speck; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051726; P:regulation of cell cycle; IEP:RGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
31Q13243    272   SRSF5_HUMAN Serine/arginine-rich splicing fac...600.0009     45.4     37     62GO:0005737; C:cytoplasm; IDA:HPA.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
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