rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
1 | P38996 | 802 | NAB3_YEAST Nuclear polyadenylated RNA-binding... | 802 | 0 | 1639 | 100 | 100 | GO:0035649; C:Nrd1 complex; IDA:SGD.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0001068; F:transcription regulatory region RNA binding; IDA:SGD. | | | | | | | | | | GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IPI:SGD.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; IMP:SGD. | 2 | Q10145 | 738 | YAS9_SCHPO Uncharacterized RNA-binding protei... | 283 | 0.000000000000002 | 84 | 27 | 43 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase. | | | | | | | | | | GO:0033554; P:cellular response to stress; IEP:PomBase.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; ISS:PomBase.::GO:0031123; P:RNA 3'-end processing; NAS:PomBase.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; ISS:PomBase. | 3 | Q9Z204 | 313 | HNRPC_MOUSE Heterogeneous nuclear ribonucleop... | 90 | 0.000000008 | 61.6 | 34 | 53 | GO:0045120; C:pronucleus; IDA:MGI.::GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 4 | Q5RA82 | 306 | HNRPC_PONAB Heterogeneous nuclear ribonucleop... | 90 | 0.00000001 | 61.2 | 34 | 53 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 5 | P07910 | 306 | HNRPC_HUMAN Heterogeneous nuclear ribonucleop... | 90 | 0.00000001 | 61.2 | 34 | 53 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:HGNC. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 6 | O77768 | 306 | HNRPC_RABIT Heterogeneous nuclear ribonucleop... | 90 | 0.00000001 | 61.2 | 34 | 53 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 7 | P19600 | 282 | HNRPC_XENLA Heterogeneous nuclear ribonucleop... | 90 | 0.00000001 | 60.5 | 34 | 52 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0038032; P:termination of G-protein coupled receptor signaling pathway; IEA:InterPro. | 8 | O60812 | 293 | HNRCL_HUMAN Heterogeneous nuclear ribonucleop... | 90 | 0.0000001 | 57.8 | 32 | 52 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 9 | Q13247 | 344 | SRSF6_HUMAN Serine/arginine-rich splicing fac... | 68 | 0.000001 | 54.7 | 35 | 71 | GO:0005654; C:nucleoplasm; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 10 | Q3B7L6 | 345 | SRSF6_BOVIN Serine/arginine-rich splicing fac... | 68 | 0.000003 | 53.9 | 37 | 69 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 11 | P26686 | 376 | SRR55_DROME Serine-arginine protein 55 OS=Dro... | 76 | 0.000003 | 53.9 | 36 | 61 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007067; P:mitosis; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 12 | Q08170 | 494 | SRSF4_HUMAN Serine/arginine-rich splicing fac... | 88 | 0.000004 | 53.9 | 31 | 60 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. | 13 | Q8VE97 | 489 | SRSF4_MOUSE Serine/arginine-rich splicing fac... | 88 | 0.000004 | 53.9 | 31 | 60 | GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 14 | Q9UKM9 | 306 | RALY_HUMAN RNA-binding protein Raly OS=Homo s... | 65 | 0.000008 | 52.4 | 35 | 55 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB. | 15 | Q23121 | 312 | RSP1_CAEEL Probable splicing factor, arginine... | 71 | 0.000008 | 52.4 | 35 | 65 | GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0008406; P:gonad development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040026; P:positive regulation of vulval development; IMP:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.::GO:0007283; P:spermatogenesis; IGI:UniProtKB. | 16 | Q64012 | 312 | RALY_MOUSE RNA-binding protein Raly OS=Mus mu... | 65 | 0.00001 | 52 | 35 | 55 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 17 | Q9FYB7 | 284 | RSZ32_ARATH Serine/arginine-rich splicing fac... | 84 | 0.00003 | 50.4 | 29 | 52 | | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:TAIR. | 18 | Q8C2Q3 | 669 | RBM14_MOUSE RNA-binding protein 14 OS=Mus mus... | 70 | 0.00004 | 50.8 | 29 | 56 | GO:0005667; C:transcription factor complex; ISS:UniProtKB. | | | | | | | | | | GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0016575; P:histone deacetylation; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 19 | Q5EA36 | 669 | RBM14_BOVIN RNA-binding protein 14 OS=Bos tau... | 70 | 0.00004 | 50.8 | 29 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 20 | Q0VFL7 | 291 | RALYL_XENTR RNA-binding Raly-like protein OS=... | 65 | 0.00004 | 49.7 | 34 | 57 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 21 | Q86SE5 | 291 | RALYL_HUMAN RNA-binding Raly-like protein OS=... | 65 | 0.00005 | 49.7 | 35 | 57 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 22 | Q08DJ0 | 293 | RALYL_BOVIN RNA-binding Raly-like protein OS=... | 65 | 0.00005 | 49.7 | 35 | 57 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 23 | P78814 | 365 | SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=S... | 67 | 0.00005 | 50.1 | 27 | 57 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:PomBase.::GO:0046982; F:protein heterodimerization activity; IPI:PomBase. | | | | | | | | | | GO:0006406; P:mRNA export from nucleus; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 24 | Q8BTF8 | 293 | RALYL_MOUSE RNA-binding Raly-like protein OS=... | 65 | 0.00006 | 49.3 | 35 | 57 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 25 | Q01560 | 414 | NOP3_YEAST Nucleolar protein 3 OS=Saccharomyc... | 70 | 0.0003 | 47.8 | 34 | 53 | GO:0005737; C:cytoplasm; IMP:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0000993; F:RNA polymerase II core binding; IPI:SGD. | | | | | | | | | | GO:0006406; P:mRNA export from nucleus; IGI:SGD.::GO:2000805; P:negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled; IDA:SGD.::GO:0017148; P:negative regulation of translation; IDA:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006415; P:translational termination; IMP:SGD. | 26 | Q6PF35 | 489 | CEL1B_XENLA CUGBP Elav-like family member 1-B... | 64 | 0.0004 | 47.4 | 38 | 58 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 27 | Q8VYA5 | 290 | RSZ33_ARATH Serine/arginine-rich splicing fac... | 84 | 0.0006 | 46.2 | 27 | 50 | GO:0016607; C:nuclear speck; IDA:TAIR. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; TAS:TAIR. | 28 | Q6DJI9 | 218 | ZCRB1_XENLA Zinc finger CCHC-type and RNA-bin... | 86 | 0.0007 | 45.4 | 26 | 51 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 29 | O35326 | 270 | SRSF5_MOUSE Serine/arginine-rich splicing fac... | 61 | 0.0008 | 45.8 | 38 | 62 | GO:0016607; C:nuclear speck; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 30 | Q09167 | 269 | SRSF5_RAT Serine/arginine-rich splicing facto... | 60 | 0.0009 | 45.4 | 37 | 62 | GO:0016607; C:nuclear speck; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051726; P:regulation of cell cycle; IEP:RGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 31 | Q13243 | 272 | SRSF5_HUMAN Serine/arginine-rich splicing fac... | 60 | 0.0009 | 45.4 | 37 | 62 | GO:0005737; C:cytoplasm; IDA:HPA.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0006376; P:mRNA splice site selection; TAS:ProtInc.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome. |