Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPL122C
Length:
513
Number of sequences:
5887
Description:
YPL122C TFB2 SGDID:S000006043, Chr XVI from 320767-319226, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of TFIIH and nucleotide excision repair factor 3 complexes, involved in transcription initiation, required for nucleotide excision repair, similar to 52 kDa subunit of human TFIIH"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q02939    513   TFB2_YEAST RNA polymerase II transcription fa...5130     1053     100     100GO:0000439; C:core TFIIH complex; IDA:SGD.::GO:0005675; C:holo TFIIH complex; IDA:SGD.::GO:0000112; C:nucleotide-excision repair factor 3 complex; IPI:SGD.
GO:0003690; F:double-stranded DNA binding; IDA:SGD.
GO:0006289; P:nucleotide-excision repair; IMP:SGD.::GO:0070816; P:phosphorylation of RNA polymerase II C-terminal domain; IDA:SGD.::GO:0006366; P:transcription from RNA polymerase II promoter; IDA:SGD.
2Q6FP41    504   TFB2_CANGA RNA polymerase II transcription fa...5170     771     72     84GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
3Q75B51    514   TFB2_ASHGO RNA polymerase II transcription fa...5090     698     67     80GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6CLR2    496   TFB2_KLULA RNA polymerase II transcription fa...5080     667     64     78GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q6BGW8    515   TFB2_DEBHA RNA polymerase II transcription fa...5340     535     52     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q6BZX4    467   TFB2_YARLI RNA polymerase II transcription fa...5127e-155     457     46     66GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7P87303    447   TFB2_SCHPO RNA polymerase II transcription fa...5096e-135     405     43     61GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005675; C:holo TFIIH complex; ISS:PomBase.::GO:0000112; C:nucleotide-excision repair factor 3 complex; ISS:PomBase.
GO:0000991; F:core RNA polymerase II binding transcription factor activity; ISS:PomBase.
GO:0000717; P:nucleotide-excision repair, DNA duplex unwinding; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:PomBase.
8O70422    463   TF2H4_MOUSE General transcription factor IIH ...5043e-92     295     35     55GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
9P60027    462   TF2H4_PANTR General transcription factor IIH ...5048e-92     294     35     55GO:0005675; C:holo TFIIH complex; ISS:UniProtKB.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
10Q92759    462   TF2H4_HUMAN General transcription factor IIH ...5048e-92     294     35     55GO:0005675; C:holo TFIIH complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
11Q54C29    483   TF2H4_DICDI General transcription factor IIH ...5334e-55     197     29     49GO:0005675; C:holo TFIIH complex; ISS:dictyBase.
GO:0006289; P:nucleotide-excision repair; ISS:dictyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:dictyBase.
12A5GB52    635   SPEA_GEOUR Biosynthetic arginine decarboxylas...705.3     33.5     27     57
GO:0008792; F:arginine decarboxylase activity; IEA:EC.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006527; P:arginine catabolic process; IEA:InterPro.::GO:0008295; P:spermidine biosynthetic process; IEA:UniProtKB-KW.
records
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