Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPL046C
Length:
99
Number of sequences:
5887
Description:
YPL046C ELC1 SGDID:S000005967, Chr XVI from 466943-466644, Genome Release 64-1-1, reverse complement, Verified ORF, "Elongin C, conserved among eukaryotes; forms a complex with Cul3p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; plays a role in global genomic repair"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q03071    99   ELOC_YEAST Elongin-C OS=Saccharomyces cerevis...992e-65     199     100     100GO:0031463; C:Cul3-RING ubiquitin ligase complex; IMP:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0070449; C:elongin complex; IPI:SGD.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0070911; P:global genome nucleotide-excision repair; IMP:SGD.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; IDA:SGD.
2Q751F9    100   ELOC_ASHGO Elongin-C OS=Y-1056) (Yeast) (Erem...953e-22     88.6     51     68GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
3P83941    112   ELOC_RAT Transcription elongation factor B po...969e-16     72     40     61GO:0005634; C:nucleus; TAS:RGD.::GO:0030891; C:VCB complex; IDA:RGD.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:RGD.::GO:0016567; P:protein ubiquitination; IC:GOC.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
4P83940    112   ELOC_MOUSE Transcription elongation factor B ...969e-16     72     40     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:MGI.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
5Q15369    112   ELOC_HUMAN Transcription elongation factor B ...969e-16     72     40     61GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:ProtInc.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.::GO:0016032; P:viral reproduction; TAS:Reactome.
6Q2KII4    112   ELOC_BOVIN Transcription elongation factor B ...969e-16     72     40     61GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
7Q9USX9    97   ELOC_SCHPO Elongin-C OS=Schizosaccharomyces p...990.0000000000007     63.9     37     62GO:0005829; C:cytosol; IDA:PomBase.::GO:0008023; C:transcription elongation factor complex; ISS:PomBase.
GO:0034243; P:regulation of transcription elongation from RNA polymerase II promoter; ISS:PomBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
8Q54Q05    109   ELOC_DICDI Transcription elongation factor B ...1010.000000009     52.8     31     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
9Q557E4    162   SKP1B_DICDI SCF ubiquitin ligase complex prot...1070.0000002     49.3     35     50GO:0005938; C:cell cortex; IDA:dictyBase.::GO:0005634; C:nucleus; IDA:dictyBase.::GO:0019005; C:SCF ubiquitin ligase complex; ISS:dictyBase.
GO:0016567; P:protein ubiquitination; TAS:dictyBase.::GO:0030587; P:sorocarp development; IMP:dictyBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
10P52285    162   SKP1A_DICDI SCF ubiquitin ligase complex prot...1070.0000002     48.9     35     50GO:0005938; C:cell cortex; IDA:dictyBase.::GO:0005813; C:centrosome; IDA:dictyBase.::GO:0005634; C:nucleus; IDA:dictyBase.::GO:0019005; C:SCF ubiquitin ligase complex; ISS:dictyBase.
GO:0005515; F:protein binding; IPI:dictyBase.
GO:0016567; P:protein ubiquitination; TAS:dictyBase.::GO:0030587; P:sorocarp development; IMP:dictyBase.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
11Q39255    160   SKP1A_ARATH SKP1-like protein 1A OS=Arabidops...1120.002     38.1     27     48GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IDA:TAIR.::GO:0009524; C:phragmoplast; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.::GO:0005819; C:spindle; IDA:TAIR.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0009734; P:auxin mediated signaling pathway; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0009873; P:ethylene mediated signaling pathway; IEA:UniProtKB-KW.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0045910; P:negative regulation of DNA recombination; IMP:TAIR.::GO:0046686; P:response to cadmium ion; IEP:TAIR.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
12O65674    152   ASK12_ARATH SKP1-like protein 12 OS=Arabidops...1040.003     37.7     33     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:TAIR.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
13A1C9U5    159   SKP1_ASPCL E3 ubiquitin ligase complex SCF su...1060.004     37.7     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
14A1CZG3    158   SKP1_NEOFI E3 ubiquitin ligase complex SCF su...1060.004     37.7     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
15Q4WTT8    158   SKP1_ASPFU E3 ubiquitin ligase complex SCF su...1060.004     37.7     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
16B0Y3B5    158   SKP1_ASPFC E3 ubiquitin ligase complex SCF su...1060.004     37.7     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
17B6QGB9    160   SKP1_PENMQ E3 ubiquitin ligase complex SCF su...1060.006     37.4     29     50
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
18C5FHU9    165   SKP1_ARTOC E3 ubiquitin ligase complex SCF su...1070.007     37     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
19O49484    152   ASK11_ARATH SKP1-like protein 11 OS=Arabidops...1040.007     37     32     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
20D4ARL8    164   SKP1_ARTBC E3 ubiquitin ligase complex SCF su...1070.009     37     29     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
21Q9Y709    161   SKP1_SCHPO Suppressor of kinetochore protein ...1080.014     36.2     30     51GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.::GO:0043291; C:RAVE complex; IPI:PomBase.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:PomBase.::GO:0005773; C:vacuole; ISS:GOC.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0000920; P:cytokinetic cell separation; IMP:PomBase.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IMP:UniProtKB.::GO:0045841; P:negative regulation of mitotic metaphase/anaphase transition; IMP:UniProtKB.::GO:0006998; P:nuclear envelope organization; IMP:UniProtKB.::GO:0042787; P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process; IC:PomBase.::GO:0042493; P:response to drug; IGI:PomBase.::GO:0007035; P:vacuolar acidification; ISS:PomBase.::GO:0070072; P:vacuolar proton-transporting V-type ATPase complex assembly; TAS:PomBase.
22B8MDP8    160   SKP1_TALSN E3 ubiquitin ligase complex SCF su...1060.02     35.8     29     50
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
23Q9LNT9    163   ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis...1140.021     35.8     28     49GO:0005737; C:cytoplasm; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0006511; P:ubiquitin-dependent protein catabolic process; TAS:TAIR.
24Q5KU00    161   SKP1_ASPOR E3 ubiquitin ligase complex SCF su...1110.025     35.4     26     47
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
25B8NSJ0    161   SKP1_ASPFN E3 ubiquitin ligase complex SCF su...1110.025     35.4     26     47
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
26Q9FHW7    171   SKP1B_ARATH SKP1-like protein 1B OS=Arabidops...1170.044     35     28     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0009734; P:auxin mediated signaling pathway; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0009793; P:embryo development ending in seed dormancy; IGI:TAIR.::GO:0009873; P:ethylene mediated signaling pathway; IEA:UniProtKB-KW.::GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; TAS:TAIR.
27Q8TGW7    165   SKP1_ARTOT E3 ubiquitin ligase complex SCF su...1070.056     34.7     27     48
GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
28F1LZ52    588   KLHL3_RAT Kelch-like protein 3 OS=Rattus norv...860.086     34.7     30     47GO:0005829; C:cytosol; ISS:UniProtKB.
GO:0072156; P:distal tubule morphogenesis; ISS:UniProtKB.::GO:0070294; P:renal sodium ion absorption; ISS:UniProtKB.
29E0CZ16    587   KLHL3_MOUSE Kelch-like protein 3 OS=Mus muscu...860.094     34.3     30     47GO:0005829; C:cytosol; ISS:UniProtKB.
GO:0072156; P:distal tubule morphogenesis; ISS:UniProtKB.::GO:0070294; P:renal sodium ion absorption; ISS:UniProtKB.
30P28327    561   RK_BOVIN Rhodopsin kinase OS=Bos taurus (Bovi...620.1     34.3     35     53GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004703; F:G-protein coupled receptor kinase activity; IEA:InterPro.::GO:0050254; F:rhodopsin kinase activity; ISS:UniProtKB.
GO:0046777; P:protein autophosphorylation; ISS:UniProtKB.::GO:0022400; P:regulation of rhodopsin mediated signaling pathway; ISS:UniProtKB.::GO:0007165; P:signal transduction; IEA:InterPro.::GO:0038032; P:termination of G-protein coupled receptor signaling pathway; IEA:InterPro.::GO:0007601; P:visual perception; IEA:UniProtKB-KW.
31Q9UH77    587   KLHL3_HUMAN Kelch-like protein 3 OS=Homo sapi...860.1     34.3     30     47GO:0031463; C:Cul3-RING ubiquitin ligase complex; TAS:UniProtKB.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:UniProtKB.
GO:0003779; F:actin binding; IEA:UniProtKB-KW.::GO:0005198; F:structural molecule activity; TAS:ProtInc.
GO:0072156; P:distal tubule morphogenesis; IMP:UniProtKB.::GO:0016567; P:protein ubiquitination; TAS:UniProtKB.::GO:0070294; P:renal sodium ion absorption; IMP:UniProtKB.
records
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