UniProt_SwissProt BLAST: Single locus

Species:

Saccharomyces cerevisiae S288C

Locus:

YPL043W

Length:

685

Number of sequences:

5887

Description:

YPL043W NOP4 SGDID:S000005964, Chr XVI from 469939-471996, Genome Release 64-1-1, Verified ORF, "Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs)"

rec.	Subject	Hit Length	Description	Align.Len	E value	Bit score	% ident.	% pos.	GO associations
151	P31483	386	TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=H...	59	0.27	37.7	34	58	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:UniProtKB.
									GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006917; P:induction of apoptosis; TAS:ProtInc.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
152	Q920Q6	346	MSI2H_MOUSE RNA-binding protein Musashi homol...	49	8.7	33.1	31	59	GO:0005737; C:cytoplasm; IDA:MGI.::GO:0005844; C:polysome; IDA:MGI.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.
									GO:0048864; P:stem cell development; IMP:UniProtKB.
153	P38760	659	MIP6_YEAST RNA-binding protein MIP6 OS=Saccha...	73	0.82	36.6	27	55	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005643; C:nuclear pore; IPI:SGD.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006406; P:mRNA export from nucleus; IPI:SGD.
154	P27476	414	NSR1_YEAST Nuclear localization sequence-bind...	217	0.00008	49.3	22	43	GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005730; C:nucleolus; TAS:SGD.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:SGD.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
									GO:0006950; P:response to stress; IEA:UniProtKB-KW.::GO:0000028; P:ribosomal small subunit assembly; TAS:SGD.::GO:0006364; P:rRNA processing; TAS:SGD.
155	A4F5G6	411	RFOX2_XENLA RNA binding protein fox-1 homolog...	86	2.1	35	31	43	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
156	Q01085	375	TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens (...	71	0.81	36.2	32	51	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005764; C:lysosome; TAS:ProtInc.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
									GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006952; P:defense response; TAS:ProtInc.::GO:0006917; P:induction of apoptosis; TAS:ProtInc.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:ProtInc.
157	Q00539	523	NAM8_YEAST Protein NAM8 OS=Saccharomyces cere...	199	0.00009	49.3	24	40	GO:0000243; C:commitment complex; IPI:SGD.::GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
									GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.
									GO:0006376; P:mRNA splice site selection; IMP:SGD.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IMP:SGD.
158	Q6Z1C0	572	NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp...	95	0.002	45.4	28	52
									GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
159	P52912	386	TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus ...	59	0.34	37.7	34	58
160	O14327	166	PAB2_SCHPO Polyadenylate-binding protein 2 OS...	90	0.00009	47	33	47	GO:0005634; C:nucleus; IDA:PomBase.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:PomBase.::GO:0005515; F:protein binding; IPI:PomBase.
									GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:PomBase.
161	P13383	713	NUCL_RAT Nucleolin OS=Rattus norvegicus (Rat)...	79	0.003	44.7	33	53	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
162	P0C1I2	315	PPIE_RHIO9 Peptidyl-prolyl cis-trans isomeras...	109	0.0001	48.5	27	48
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006457; P:protein folding; IEA:UniProtKB-KW.
163	Q4KM14	316	TSP1L_DANRE tRNA selenocysteine 1-associated ...	86	0.0001	48.5	35	52	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006412; P:translation; IEA:UniProtKB-KW.
164	Q9SD61	352	C3H42_ARATH Zinc finger CCCH domain-containin...	73	9.3	32.7	26	49
									GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
165	Q9SX79	432	RB47C_ARATH Polyadenylate-binding protein RBP...	110	2.4	35	28	47	GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
									GO:0034605; P:cellular response to heat; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
166	P70318	392	TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus (...	71	0.91	36.2	32	51	GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
									GO:0017091; F:AU-rich element binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro.
									GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0007281; P:germ cell development; IMP:MGI.::GO:0008284; P:positive regulation of cell proliferation; IMP:MGI.::GO:0017145; P:stem cell division; IMP:MGI.
167	Q44554	103	RBPB_NOSS1 Putative RNA-binding protein rbpB ...	80	0.018	39.3	29	51
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
168	O13845	603	RSD1_SCHPO RNA-binding protein rsd1 OS=Schizo...	94	0.13	39.3	24	48	GO:0005681; C:spliceosomal complex; ISS:PomBase.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
169	Q55FQ0	459	RU17_DICDI U1 small nuclear ribonucleoprotein...	96	0.0001	48.5	34	48	GO:0005681; C:spliceosomal complex; ISS:UniProtKB.::GO:0005685; C:U1 snRNP; ISS:dictyBase.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0043484; P:regulation of RNA splicing; ISS:UniProtKB.
170	Q6TY21	218	EPA2B_XENLA Embryonic polyadenylate-binding p...	90	0.0002	47	29	47	GO:0005737; C:cytoplasm; IDA:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
171	P51989	346	RO21_XENLA Heterogeneous nuclear ribonucleopr...	50	3.6	34.3	32	50	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
172	Q9JJ43	396	RFOX1_MOUSE RNA binding protein fox-1 homolog...	122	0.0002	48.1	30	53	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
173	P39697	212	RT19_ARATH 40S ribosomal protein S19, mitocho...	76	0.0002	47	32	51	GO:0005763; C:mitochondrial small ribosomal subunit; IDA:TAIR.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
									GO:0006412; P:translation; NAS:TAIR.
174	P08199	714	NUCL_MESAU Nucleolin OS=Mesocricetus auratus ...	79	0.003	44.7	33	53	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
175	P82277	260	RRP2_SPIOL 30S ribosomal protein 2, chloropla...	103	0.61	36.6	27	46	GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
176	P21522	342	ROA1_SCHAM Heterogeneous nuclear ribonucleopr...	49	5.6	33.5	37	55	GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
177	P41891	500	GAR2_SCHPO Protein gar2 OS=Schizosaccharomyce...	73	0.63	37	26	58	GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:PomBase.
									GO:0007000; P:nucleolus organization; IMP:PomBase.::GO:0006364; P:rRNA processing; IMP:PomBase.
178	Q2HJ60	341	ROA2_BOVIN Heterogeneous nuclear ribonucleopr...	73	0.032	40.8	32	51	GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
									GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
179	Q14103	355	HNRPD_HUMAN Heterogeneous nuclear ribonucleop...	63	0.29	37.7	32	57	GO:0005829; C:cytosol; TAS:Reactome.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; NAS:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0042162; F:telomeric DNA binding; IDA:UniProtKB.
									GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0045893; P:positive regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0006401; P:RNA catabolic process; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
180	O57437	286	DAZLA_XENLA Deleted in azoospermia-like-A OS=...	147	0.0002	47.4	23	44	GO:0032019; C:mitochondrial cloud; IDA:UniProtKB.::GO:0045495; C:pole plasm; IDA:UniProtKB.
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0008494; F:translation activator activity; IDA:UniProtKB.
									GO:0007281; P:germ cell development; IMP:UniProtKB.::GO:0008354; P:germ cell migration; IMP:UniProtKB.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0045948; P:positive regulation of translational initiation; IDA:UniProtKB.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
181	Q8CH84	359	ELAV2_RAT ELAV-like protein 2 OS=Rattus norve...	69	0.4	37.4	26	54
									GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.

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