Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPL029W
Length:
737
Number of sequences:
5887
Description:
YPL029W SUV3 SGDID:S000005950, Chr XVI from 495506-497719, Genome Release 64-1-1, Verified ORF, "ATP-dependent RNA helicase, component of the mitochondrial degradosome along with the RNase Dss1p; the degradosome associates with the ribosome and mediates RNA turnover; also required during splicing of the COX1 AI5_beta intron"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
121A7TJT7    442   SUB22_VANPO ATP-dependent RNA helicase SUB2-2...1051.2     36.2     25     46GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
122Q63413    428   DX39B_RAT Spliceosome RNA helicase Ddx39b OS=...1181.2     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
123Q9Z1N5    428   DX39B_MOUSE Spliceosome RNA helicase Ddx39b O...1181.2     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
124Q8N3C0    2202   ASCC3_HUMAN Activating signal cointegrator 1 ...891.2     36.2     25     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; TAS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; IDA:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0008283; P:cell proliferation; IMP:UniProtKB.::GO:0006307; P:DNA dealkylation involved in DNA repair; IDA:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
125A2RUV5    1336   HFM1_XENTR Probable ATP-dependent DNA helicas...631.3     36.2     29     49
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
126Q5RE47    428   DX39B_PONAB Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
127Q29024    428   DX39B_PIG Spliceosome RNA helicase DDX39B OS=...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
128P60024    428   DX39B_PANTR Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
129Q5TM17    428   DX39B_MACMU Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
130Q13838    428   DX39B_HUMAN Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IDA:BHF-UCL.::GO:0000346; C:transcription export complex; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0043008; F:ATP-dependent protein binding; IDA:BHF-UCL.::GO:0004004; F:ATP-dependent RNA helicase activity; IDA:UniProtKB.::GO:0030621; F:U4 snRNA binding; IDA:BHF-UCL.::GO:0017070; F:U6 snRNA binding; IDA:BHF-UCL.
GO:0046784; P:intronless viral mRNA export from host nucleus; IDA:UniProtKB.::GO:0010501; P:RNA secondary structure unwinding; IDA:BHF-UCL.::GO:0000245; P:spliceosomal complex assembly; IDA:BHF-UCL.
131Q6C024    575   PRP28_YARLI Pre-mRNA-splicing ATP-dependent R...781.3     36.2     32     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
132Q3T147    428   DX39B_BOVIN Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
133O51528    686   RECG_BORBU ATP-dependent DNA helicase recG OS...3001.3     36.2     25     41
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004003; F:ATP-dependent DNA helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
134F1LPQ2    2197   ASCC3_RAT Activating signal cointegrator 1 co...891.3     36.2     25     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0008283; P:cell proliferation; ISS:UniProtKB.::GO:0006307; P:DNA dealkylation involved in DNA repair; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
135Q5ZHZ0    428   DX39B_CHICK Spliceosome RNA helicase DDX39B O...1181.3     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
136Q5WR10    428   DX39B_CANFA Spliceosome RNA helicase DDX39B O...1181.4     35.8     21     46GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
137E9PZJ8    2198   ASCC3_MOUSE Activating signal cointegrator 1 ...891.4     36.2     25     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0008283; P:cell proliferation; ISS:UniProtKB.::GO:0006307; P:DNA dealkylation involved in DNA repair; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
138Q5U216    427   DX39A_RAT ATP-dependent RNA helicase DDX39A O...1261.4     35.8     21     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
139E1BNG3    2201   ASCC3_BOVIN Activating signal cointegrator 1 ...891.5     36.2     25     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0043140; F:ATP-dependent 3'-5' DNA helicase activity; ISS:UniProtKB.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0008283; P:cell proliferation; ISS:UniProtKB.::GO:0006307; P:DNA dealkylation involved in DNA repair; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
140Q8VDW0    427   DX39A_MOUSE ATP-dependent RNA helicase DDX39A...1261.5     35.8     21     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
141Q8P4D4    573   RHLB_XANCP ATP-dependent RNA helicase rhlB OS...1571.5     35.8     21     40
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
142B0RWT6    573   RHLB_XANCB ATP-dependent RNA helicase rhlB OS...1571.5     35.8     21     40
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
143Q4UPY5    573   RHLB_XANC8 ATP-dependent RNA helicase rhlB OS...1571.5     35.8     21     40
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
144A7TLA0    441   SUB21_VANPO ATP-dependent RNA helicase SUB2-1...1051.5     35.8     25     45GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
145A8GZJ0    436   RHLB_SHEPA ATP-dependent RNA helicase rhlB OS...1361.6     35.8     23     45
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004004; F:ATP-dependent RNA helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
146O00148    427   DX39A_HUMAN ATP-dependent RNA helicase DDX39A...1261.6     35.8     21     44GO:0005634; C:nucleus; TAS:ProtInc.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006406; P:mRNA export from nucleus; IGI:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IGI:UniProtKB.
147Q0UY62    592   DBP3_PHANO ATP-dependent RNA helicase DBP3 OS...801.7     35.8     28     45GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
148Q10MH8    770   RH24_ORYSJ DEAD-box ATP-dependent RNA helicas...1061.7     35.8     31     52
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
149Q4JC00    705   HELS_SULAC Putative ski2-type helicase OS=NBR...1731.7     35.8     25     36
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:InterPro.
150Q9LUW6    610   RH9_ARATH DEAD-box ATP-dependent RNA helicase...1201.9     35.4     26     44GO:0043234; C:protein complex; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IDA:TAIR.::GO:0003723; F:RNA binding; IDA:TAIR.
GO:0009409; P:response to cold; IEP:TAIR.::GO:0009651; P:response to salt stress; IMP:TAIR.::GO:0009414; P:response to water deprivation; IMP:TAIR.
151Q9LUW5    616   RH53_ARATH DEAD-box ATP-dependent RNA helicas...1031.9     35.4     24     45GO:0005618; C:cell wall; IDA:TAIR.::GO:0005739; C:mitochondrion; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0043234; C:protein complex; IDA:TAIR.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000373; P:Group II intron splicing; IMP:TAIR.::GO:0009409; P:response to cold; IEP:TAIR.
records
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