Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YPL022W
Length:
1100
Number of sequences:
5887
Description:
YPL022W RAD1 SGDID:S000005943, Chr XVI from 506697-509999, Genome Release 64-1-1, Verified ORF, "Single-stranded DNA endonuclease (with Rad10p), cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P06777    1100   RAD1_YEAST DNA repair protein RAD1 OS=Sacchar...11000     2259     100     100GO:0005634; C:nucleus; IDA:SGD.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003697; F:single-stranded DNA binding; IDA:SGD.
GO:0000724; P:double-strand break repair via homologous recombination; IBA:RefGenome.::GO:0000736; P:double-strand break repair via single-strand annealing, removal of nonhomologous ends; IMP:SGD.::GO:0000710; P:meiotic mismatch repair; IMP:SGD.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; IDA:SGD.::GO:0000712; P:resolution of meiotic recombination intermediates; IBA:RefGenome.
2P36617    892   RAD16_SCHPO DNA repair protein rad16 OS=Schiz...10272e-146     468     33     50GO:0000110; C:nucleotide-excision repair factor 1 complex; ISS:RefGenome.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046982; F:protein heterodimerization activity; IPI:PomBase.::GO:0003697; F:single-stranded DNA binding; ISS:RefGenome.
GO:0000724; P:double-strand break repair via homologous recombination; ISS:RefGenome.::GO:0000736; P:double-strand break repair via single-strand annealing, removal of nonhomologous ends; ISS:RefGenome.::GO:0006311; P:meiotic gene conversion; IMP:PomBase.::GO:0000710; P:meiotic mismatch repair; ISS:RefGenome.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; TAS:PomBase.::GO:0000712; P:resolution of meiotic recombination intermediates; ISS:RefGenome.
3Q9QZD4    917   XPF_MOUSE DNA repair endonuclease XPF OS=Mus ...10099e-120     397     29     48GO:0000110; C:nucleotide-excision repair factor 1 complex; IBA:RefGenome.
GO:0003697; F:single-stranded DNA binding; IBA:RefGenome.::GO:0000014; F:single-stranded DNA specific endodeoxyribonuclease activity; IBA:RefGenome.
GO:0000724; P:double-strand break repair via homologous recombination; IBA:RefGenome.::GO:0000710; P:meiotic mismatch repair; IBA:RefGenome.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; IBA:RefGenome.::GO:0000712; P:resolution of meiotic recombination intermediates; IBA:RefGenome.::GO:0009650; P:UV protection; IMP:MGI.
4Q9QYM7    913   XPF_CRIGR DNA repair endonuclease XPF OS=Cric...4702e-51     200     31     49GO:0000784; C:nuclear chromosome, telomeric region; ISS:UniProtKB.::GO:0000110; C:nucleotide-excision repair factor 1 complex; ISS:UniProtKB.
GO:0003684; F:damaged DNA binding; ISS:UniProtKB.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; ISS:UniProtKB.
GO:0000724; P:double-strand break repair via homologous recombination; ISS:UniProtKB.::GO:0032205; P:negative regulation of telomere maintenance; ISS:UniProtKB.::GO:0006295; P:nucleotide-excision repair, DNA incision, 3'-to lesion; ISS:UniProtKB.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; ISS:UniProtKB.::GO:0009411; P:response to UV; ISS:UniProtKB.
5Q92889    916   XPF_HUMAN DNA repair endonuclease XPF OS=Homo...4942e-50     196     29     49GO:0000784; C:nuclear chromosome, telomeric region; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0000110; C:nucleotide-excision repair factor 1 complex; IDA:UniProtKB.
GO:0003684; F:damaged DNA binding; IMP:UniProtKB.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0047485; F:protein N-terminus binding; IPI:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.::GO:0000014; F:single-stranded DNA specific endodeoxyribonuclease activity; IBA:RefGenome.
GO:0000724; P:double-strand break repair via homologous recombination; IMP:UniProtKB.::GO:0000710; P:meiotic mismatch repair; IBA:RefGenome.::GO:0032205; P:negative regulation of telomere maintenance; IMP:UniProtKB.::GO:0000718; P:nucleotide-excision repair, DNA damage removal; TAS:Reactome.::GO:0006295; P:nucleotide-excision repair, DNA incision, 3'-to lesion; IMP:UniProtKB.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; IMP:UniProtKB.::GO:0000712; P:resolution of meiotic recombination intermediates; IBA:RefGenome.::GO:0010834; P:telomere maintenance via telomere shortening; IMP:BHF-UCL.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.
6Q24087    961   XPF_DROME DNA repair endonuclease XPF OS=Dros...4863e-39     162     25     48GO:0000110; C:nucleotide-excision repair factor 1 complex; IBA:RefGenome.
GO:0046982; F:protein heterodimerization activity; IPI:FlyBase.::GO:0003697; F:single-stranded DNA binding; IBA:RefGenome.::GO:0000014; F:single-stranded DNA specific endodeoxyribonuclease activity; IBA:RefGenome.
GO:0000724; P:double-strand break repair via homologous recombination; IBA:RefGenome.::GO:0016321; P:female meiosis chromosome segregation; IMP:FlyBase.::GO:0000710; P:meiotic mismatch repair; IBA:RefGenome.::GO:0007095; P:mitotic cell cycle G2/M transition DNA damage checkpoint; IGI:FlyBase.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; IBA:RefGenome.::GO:0000712; P:resolution of meiotic recombination intermediates; IMP:FlyBase.
7Q9LKI5    956   XPF_ARATH DNA repair endonuclease UVH1 OS=Ara...3682e-38     159     31     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000014; F:single-stranded DNA specific endodeoxyribonuclease activity; IMP:TAIR.
GO:0000724; P:double-strand break repair via homologous recombination; IMP:TAIR.::GO:0006289; P:nucleotide-excision repair; IMP:TAIR.::GO:0006979; P:response to oxidative stress; IMP:TAIR.::GO:0009314; P:response to radiation; IEP:TAIR.
8Q54PN5    964   XPF_DICDI DNA repair endonuclease XPF OS=Dict...4601e-30     134     27     45GO:0000110; C:nucleotide-excision repair factor 1 complex; ISS:dictyBase.
GO:0003697; F:single-stranded DNA binding; IBA:RefGenome.::GO:0000014; F:single-stranded DNA specific endodeoxyribonuclease activity; ISS:dictyBase.
GO:0000724; P:double-strand break repair via homologous recombination; IMP:dictyBase.::GO:0000710; P:meiotic mismatch repair; IBA:RefGenome.::GO:0006296; P:nucleotide-excision repair, DNA incision, 5'-to lesion; ISS:dictyBase.::GO:0000712; P:resolution of meiotic recombination intermediates; IBA:RefGenome.
9Q58900    778   Y1505_METJA Putative ATP-dependent RNA helica...830.008     43.9     37     57
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:InterPro.::GO:0004518; F:nuclease activity; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:InterPro.
10Q8BGE5    2021   FANCM_MOUSE Fanconi anemia group M protein ho...2460.036     42     19     41GO:0071821; C:FANCM-MHF complex; ISS:UniProtKB.::GO:0043240; C:Fanconi anaemia nuclear complex; ISS:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:InterPro.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0031297; P:replication fork processing; ISS:UniProtKB.::GO:0000712; P:resolution of meiotic recombination intermediates; ISS:UniProtKB.
11Q8IYD8    2048   FANCM_HUMAN Fanconi anemia group M protein OS...2321.1     37     19     41GO:0071821; C:FANCM-MHF complex; IDA:UniProtKB.::GO:0043240; C:Fanconi anaemia nuclear complex; IDA:UniProtKB.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.::GO:0003682; F:chromatin binding; IDA:UniProtKB.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004518; F:nuclease activity; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006281; P:DNA repair; TAS:Reactome.::GO:0031297; P:replication fork processing; IMP:UniProtKB.::GO:0000712; P:resolution of meiotic recombination intermediates; IMP:UniProtKB.
12Q8TG13    336   CSK2A_NEUCR Casein kinase II subunit alpha OS...1662.4     35.4     24     40
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
records
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