Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR319W
Length:
213
Number of sequences:
5887
Description:
YOR319W HSH49 SGDID:S000005846, Chr XV from 912822-913463, Genome Release 64-1-1, Verified ORF, "U2-snRNP associated splicing factor with similarity to the mammalian splicing factor SAP49; proposed to function as a U2-snRNP assembly factor along with Hsh155p and binding partner Cus1p; contains two RNA recognition motifs (RRM)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
391Q3ZBP3    403   RBMS1_BOVIN RNA-binding motif, single-strande...1640.033     38.5     21     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
392Q5RB68    556   IF2B2_PONAB Insulin-like growth factor 2 mRNA...750.033     38.5     29     55GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0044430; C:cytoskeletal part; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
393Q804A5    218   EPA2A_XENLA Embryonic polyadenylate-binding p...930.034     37.7     34     45GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
394A6SGN8    288   EIF3G_BOTFB Eukaryotic translation initiation...630.034     38.1     29     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
395P17130    365   ROA1_XENLA Heterogeneous nuclear ribonucleopr...1970.034     38.1     20     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
396A7EWN6    288   EIF3G_SCLS1 Eukaryotic translation initiation...630.035     38.1     29     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
397Q9PTX2    164   CIRBP_LITCT Cold-inducible RNA-binding protei...870.62     33.9     26     48GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0016477; P:cell migration; ISS:UniProtKB.::GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0042750; P:hibernation; IEP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; ISS:UniProtKB.::GO:0009409; P:response to cold; ISS:UniProtKB.
398Q4KMD3    208   U1SBP_DANRE U11/U12 small nuclear ribonucleop...890.037     37.7     26     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
399Q91W59    403   RBMS1_MOUSE RNA-binding motif, single-strande...1680.039     38.1     21     38GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
400Q3ZC34    407   RBMS2_BOVIN RNA-binding motif, single-strande...1630.039     38.1     20     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
401B4G3E2    276   EI3G2_DROPE Eukaryotic translation initiation...730.044     37.7     30     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
402Q298C0    274   EI3G2_DROPS Eukaryotic translation initiation...730.045     37.7     30     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
403Q15434    407   RBMS2_HUMAN RNA-binding motif, single-strande...1630.046     37.7     20     37GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006396; P:RNA processing; TAS:ProtInc.
404Q6P616    417   RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS...910.046     37.7     26     48GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0017069; F:snRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:UniProtKB.::GO:0033120; P:positive regulation of RNA splicing; ISS:UniProtKB.
405Q6L733    419   GLADA_STRKN Putative L-glutamine:3-amino-2,3-...610.048     37.7     39     52
GO:0030170; F:pyridoxal phosphate binding; IEA:InterPro.::GO:0008483; F:transaminase activity; IEA:UniProtKB-KW.
GO:0017000; P:antibiotic biosynthetic process; IEA:UniProtKB-KW.
406Q5PQP1    403   RBMS1_RAT RNA-binding motif, single-stranded-...1640.049     37.7     20     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
407Q28G87    593   LARP7_XENTR La-related protein 7 OS=Xenopus t...650.053     37.7     32     52GO:0005634; C:nucleus; IEA:InterPro.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006396; P:RNA processing; IEA:InterPro.
408Q8C7E9    632   CSTFT_MOUSE Cleavage stimulation factor subun...1030.87     34.3     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0006378; P:mRNA polyadenylation; TAS:MGI.
409Q5R9H4    587   A1CF_PONAB APOBEC1 complementation factor OS=...715.9     31.6     28     48GO:0030895; C:apolipoprotein B mRNA editing enzyme complex; ISS:UniProtKB.::GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003727; F:single-stranded RNA binding; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0050821; P:protein stabilization; ISS:UniProtKB.
410Q9D0B0    222   SRSF9_MOUSE Serine/arginine-rich splicing fac...880.061     37     28     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
411Q39244    250   RU1A_ARATH U1 small nuclear ribonucleoprotein...850.062     37.4     31     52GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.::GO:0009651; P:response to salt stress; IGI:TAIR.
412P09405    707   NUCL_MOUSE Nucleolin OS=Mus musculus (Mouse)....1840.38     35.4     26     44GO:0005730; C:nucleolus; IDA:MGI.::GO:0005654; C:nucleoplasm; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0042162; F:telomeric DNA binding; ISS:UniProtKB.
413Q7ZWA3    379   RBMX_DANRE RNA-binding motif protein, X chrom...860.063     37.4     30     52GO:0071013; C:catalytic step 2 spliceosome; ISS:UniProtKB.::GO:0070062; C:extracellular vesicular exosome; ISS:UniProtKB.::GO:0005719; C:nuclear euchromatin; ISS:UniProtKB.
GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0001047; F:core promoter binding; ISS:UniProtKB.::GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0071347; P:cellular response to interleukin-1; ISS:UniProtKB.::GO:0006509; P:membrane protein ectodomain proteolysis; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0051260; P:protein homooligomerization; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
414Q9H0L4    616   CSTFT_HUMAN Cleavage stimulation factor subun...1031.1     33.9     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
415Q02427    144   RBP1_DROME RNA-binding protein 1 OS=Drosophil...730.072     36.2     27     52GO:0005634; C:nucleus; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; IDA:FlyBase.
416Q18409    179   RSP6_CAEEL Probable splicing factor, arginine...631.5     32.7     30     57GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0008406; P:gonad development; IGI:UniProtKB.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0048477; P:oogenesis; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040026; P:positive regulation of vulval development; IMP:WormBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:WormBase.::GO:0031554; P:regulation of transcription termination, DNA-dependent; IGI:WormBase.::GO:0008380; P:RNA splicing; NAS:UniProtKB.
417P32831    672   NGR1_YEAST Negative growth regulatory protein...1542.6     32.7     20     42GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0048471; C:perinuclear region of cytoplasm; IDA:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0061158; P:3'-UTR-mediated mRNA destabilization; IDA:SGD.::GO:0007005; P:mitochondrion organization; IMP:SGD.
418P30352    221   SRSF2_CHICK Serine/arginine-rich splicing fac...660.076     37     26     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
419Q9NQ94    594   A1CF_HUMAN APOBEC1 complementation factor OS=...714.3     32     28     48GO:0030895; C:apolipoprotein B mRNA editing enzyme complex; IDA:UniProtKB.::GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003727; F:single-stranded RNA binding; IDA:UniProtKB.
GO:0016554; P:cytidine to uridine editing; TAS:Reactome.::GO:0016556; P:mRNA modification; TAS:Reactome.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0050821; P:protein stabilization; IDA:UniProtKB.
420Q06A98    221   SRSF2_PIG Serine/arginine-rich splicing facto...660.077     37     26     56GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
421Q54PB2    895   MRD1_DICDI Multiple RNA-binding domain-contai...1940.077     37.4     25     44GO:0005730; C:nucleolus; ISS:dictyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030515; F:snoRNA binding; ISS:dictyBase.
GO:0006364; P:rRNA processing; ISS:dictyBase.
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