Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR179C
Length:
188
Number of sequences:
5887
Description:
YOR179C SYC1 SGDID:S000005705, Chr XV from 672411-671845, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the APT subcomplex of cleavage and polyadenylation factor, may have a role in 3' end formation of both polyadenylated and non-polyadenylated RNAs"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q08553    188   SYC1_YEAST Protein SYC1 OS=Saccharomyces cere...1882e-135     383     100     100GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0030847; P:termination of RNA polymerase II transcription, exosome-dependent; IPI:SGD.::GO:0030846; P:termination of RNA polymerase II transcription, poly(A)-coupled; IPI:SGD.
2Q74ZC0    771   YSH1_ASHGO Endoribonuclease YSH1 OS=Y-1056) (...1921e-30     122     38     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
3Q06224    779   YSH1_YEAST Endoribonuclease YSH1 OS=Saccharom...1993e-30     121     37     56GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:SGD.
GO:0004521; F:endoribonuclease activity; IMP:SGD.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006379; P:mRNA cleavage; IMP:SGD.::GO:0006378; P:mRNA polyadenylation; IMP:SGD.::GO:0031126; P:snoRNA 3'-end processing; IMP:SGD.::GO:0034247; P:snoRNA splicing; IMP:SGD.::GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD.
4Q6CUI5    764   YSH1_KLULA Endoribonuclease YSH1 OS=1267 / NR...1873e-21     95.1     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
5Q6FUA5    771   YSH1_CANGA Endoribonuclease YSH1 OS=NRRL Y-65...1968e-21     94.4     33     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
6Q6BMW3    815   YSH1_DEBHA Endoribonuclease YSH1 OS=0083 / IG...1940.0000000001     63.5     26     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
7Q59P50    870   YSH1_CANAL Endoribonuclease YSH1 OS=Candida a...1900.0000001     54.3     24     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0042493; P:response to drug; IMP:CGD.
8O13794    757   YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosac...1620.000001     51.2     26     48GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0004521; F:endoribonuclease activity; ISS:PomBase.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006379; P:mRNA cleavage; IC:PomBase.::GO:0006378; P:mRNA polyadenylation; IC:PomBase.
9Q6C2Z7    827   YSH1_YARLI Endoribonuclease YSH1 OS=lipolytic...1550.00004     47     26     48GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
10Q9TL04    1463   RPOC2_NEPOL DNA-directed RNA polymerase subun...318.5     30.8     42     61GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
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