Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR166C
Length:
458
Number of sequences:
5887
Description:
YOR166C SWT1 SGDID:S000005692, Chr XV from 648502-647126, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA endoribonuclease involved in perinuclear mRNP quality control via the turnover of aberrant, unprocessed pre-mRNAs; interacts with subunits of THO/TREX, TREX-2, and RNA polymerase II; contains a PIN (PilT N terminus) domain"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12104    458   SWT1_YEAST Transcriptional protein SWT1 OS=Sa...4580     947     100     100GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0004521; F:endoribonuclease activity; IDA:SGD.
GO:0071032; P:nuclear mRNA surveillance of mRNP export; IMP:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IMP:SGD.
2Q9P7J1    462   SWT1_SCHPO Transcriptional protein swt1 OS=Sc...1594e-19     92.8     36     56GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0004521; F:endoribonuclease activity; ISS:PomBase.
GO:0071032; P:nuclear mRNA surveillance of mRNP export; ISS:PomBase.::GO:0006351; P:transcription, DNA-dependent; ISS:PomBase.
3Q5T5J6    900   SWT1_HUMAN Transcriptional protein SWT1 OS=Ho...2510.000000003     63.2     26     45
4Q9DBQ9    907   SWT1_MOUSE Transcriptional protein SWT1 OS=Mu...1650.0000007     55.5     28     51
5P61406    1418   EST1A_MOUSE Telomerase-binding protein EST1A ...1650.00001     51.2     29     45GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0042162; F:telomeric DNA binding; ISS:HGNC.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000723; P:telomere maintenance; ISS:HGNC.
6Q5RAK6    1419   EST1A_PONAB Telomerase-binding protein EST1A ...1650.00002     51.2     30     45GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; ISS:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004521; F:endoribonuclease activity; ISS:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.
7Q86US8    1419   EST1A_HUMAN Telomerase-binding protein EST1A ...1650.0004     46.6     30     45GO:0000781; C:chromosome, telomeric region; IEA:UniProtKB-SubCell.::GO:0005829; C:cytosol; IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005697; C:telomerase holoenzyme complex; TAS:HGNC.
GO:0004521; F:endoribonuclease activity; IDA:UniProtKB.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0042162; F:telomeric DNA binding; IDA:HGNC.
GO:0010467; P:gene expression; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:HGNC.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IMP:UniProtKB.::GO:0035303; P:regulation of dephosphorylation; TAS:HGNC.::GO:0000723; P:telomere maintenance; IMP:HGNC.
8Q70XW4    313   CCSA_AMBTC Cytochrome c biogenesis protein cc...600.21     37.4     27     57GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.::GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0017004; P:cytochrome complex assembly; IEA:UniProtKB-KW.::GO:0008535; P:respiratory chain complex IV assembly; IEA:InterPro.
9Q8TG40    248   KAD6_CANAL Putative adenylate kinase HBR1 OS=...1080.52     35.8     27     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004017; F:adenylate kinase activity; IEA:EC.::GO:0005524; F:ATP binding; IDA:CGD.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q9UPR3    1016   SMG5_HUMAN Protein SMG5 OS=Homo sapiens (Huma...651.1     35.4     35     51GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IDA:HGNC.
GO:0051721; F:protein phosphatase 2A binding; IDA:HGNC.
GO:0010467; P:gene expression; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:HGNC.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:HGNC.::GO:0035303; P:regulation of dephosphorylation; IMP:HGNC.
11Q6ZPY2    1017   SMG5_MOUSE Protein SMG5 OS=Mus musculus (Mous...651.4     35     35     51GO:0005737; C:cytoplasm; ISS:HGNC.::GO:0005634; C:nucleus; ISS:HGNC.
GO:0051721; F:protein phosphatase 2A binding; ISS:HGNC.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0035303; P:regulation of dephosphorylation; ISS:HGNC.
12Q2HBQ2    447   EIF3E_CHAGB Eukaryotic translation initiation...531.4     35     30     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
13Q834X4    626   F16PC_ENTFA Fructose-1,6-bisphosphatase class...822.7     34.3     28     48
GO:0042132; F:fructose 1,6-bisphosphate 1-phosphatase activity; IEA:EC.
GO:0006094; P:gluconeogenesis; IEA:InterPro.
14Q081P4    350   RNFD_SHEFN Electron transport complex protein...1115.1     33.1     27     45GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
15Q5WYX4    401   SYY_LEGPL Tyrosine--tRNA ligase OS=Legionella...936.8     32.7     29     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0004831; F:tyrosine-tRNA ligase activity; IEA:EC.
GO:0006437; P:tyrosyl-tRNA aminoacylation; IEA:InterPro.
16Q5ZY07    401   SYY_LEGPH Tyrosine--tRNA ligase OS=ATCC 33152...939.8     32.3     29     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0004831; F:tyrosine-tRNA ligase activity; IEA:EC.
GO:0006437; P:tyrosyl-tRNA aminoacylation; IEA:InterPro.
records
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