Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR159C
Length:
94
Number of sequences:
5887
Description:
YOR159C SME1 SGDID:S000005685, Chr XV from 633566-633282, Genome Release 64-1-1, reverse complement, Verified ORF, "Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
61Q0STR1    80   HFQ_CLOPS Protein hfq OS=Clostridium perfring...532.2     28.9     36     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
62Q8XL84    80   HFQ_CLOPE Protein hfq OS=Clostridium perfring...532.2     28.9     36     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
63Q0TRD3    80   HFQ_CLOP1 Protein hfq OS=Clostridium perfring...532.2     28.9     36     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
64P53905    115   LSM7_YEAST U6 snRNA-associated Sm-like protei...742.4     29.6     31     54GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; IPI:SGD.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
65Q8RA69    86   HFQ_THETN Protein hfq OS=100824 / MB4) (Calda...362.5     28.9     36     61
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
66Q2HAN0    82   LSM6_CHAGB U6 snRNA-associated Sm-like protei...682.6     28.9     29     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
67Q54RX0    85   RUXG_DICDI Probable small nuclear ribonucleop...803.5     28.5     26     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
68B3PDC1    88   HFQ_CELJU Protein hfq OS=cellulosa). GN=hfq O...703.5     28.9     27     50
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
69O29386    77   RUXX_ARCFU Putative snRNP Sm-like protein OS=...703.8     28.5     29     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
70A5D2K8    83   HFQ_PELTS Protein hfq OS=Pelotomaculum thermo...553.9     28.5     36     51
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
71Q187T2    86   HFQ_CLOD6 Protein hfq OS=Clostridium difficil...324.1     28.5     38     69
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
72Q21HA2    86   HFQ_SACD2 Protein hfq OS=Saccharophagus degra...634.1     28.5     27     51
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
73Q9TU66    240   RSMB_MONDO Small nuclear ribonucleoprotein-as...896.5     28.9     27     47GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
74P40018    196   RSMB_YEAST Small nuclear ribonucleoprotein-as...617.1     28.5     30     54GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
75P63164    240   RSMN_RAT Small nuclear ribonucleoprotein-asso...547.4     28.5     35     56GO:0005685; C:U1 snRNP; IDA:RGD.::GO:0005686; C:U2 snRNP; IDA:RGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009725; P:response to hormone stimulus; IEP:RGD.
76Q5R6I0    240   RSMN_PONAB Small nuclear ribonucleoprotein-as...547.4     28.5     35     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
77P63163    240   RSMN_MOUSE Small nuclear ribonucleoprotein-as...547.4     28.5     35     56GO:0005634; C:nucleus; TAS:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
78Q60HD3    240   RSMN_MACFA Small nuclear ribonucleoprotein-as...547.4     28.5     35     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
79P63162    240   RSMN_HUMAN Small nuclear ribonucleoprotein-as...547.4     28.5     35     56GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:UniProtKB.::GO:0005681; C:spliceosomal complex; TAS:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; TAS:UniProtKB.
80B0K1A5    86   HFQ_THEPX Protein hfq OS=Thermoanaerobacter s...358.9     27.7     37     60
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
81B0K9L8    86   HFQ_THEP3 Protein hfq OS=(Clostridium thermoh...358.9     27.7     37     60
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
82Q17QN3    240   RSMN_BOVIN Small nuclear ribonucleoprotein-as...549.5     28.1     35     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
83Q8TTC6    204   Y511_METAC UPF0228 protein MA_0511 OS=C2A). G...409.6     28.1     33     53
84A4J5Q0    80   HFQ_DESRM Protein hfq OS=Desulfotomaculum red...429.7     27.3     43     52
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
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