Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR159C
Length:
94
Number of sequences:
5887
Description:
YOR159C SME1 SGDID:S000005685, Chr XV from 633566-633282, Genome Release 64-1-1, reverse complement, Verified ORF, "Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31B6YUU5    78   RUXX_THEON Putative snRNP Sm-like protein OS=...820.016     34.7     28     50GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
32Q9V0Y8    75   RUXX_PYRAB Putative snRNP Sm-like protein OS=...790.019     34.3     28     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW.
33O74016    75   RUXX_PYRHO Putative snRNP Sm-like protein OS=...790.025     33.9     27     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
34A8MWD9    76   RUXGL_HUMAN Small nuclear ribonucleoprotein G...590.025     33.9     29     56GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
35O82221    80   RUXG_ARATH Probable small nuclear ribonucleop...540.027     33.9     30     57GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
36O74499    113   LSM7_SCHPO U6 snRNA-associated Sm-like protei...610.034     34.3     36     56GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase.
GO:0003723; F:RNA binding; ISS:PomBase.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
37Q8U0P4    76   RUXX_PYRFU Putative snRNP Sm-like protein OS=...790.04     33.5     28     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
38Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...800.059     32.7     29     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
39Q5JIE0    76   RUXX_PYRKO Putative snRNP Sm-like protein OS=...790.071     32.7     28     52GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
40P24715    81   RUXG_MEDSA Probable small nuclear ribonucleop...710.072     32.7     25     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
41Q9VXE0    76   RUXG_DROME Probable small nuclear ribonucleop...590.075     32.7     31     61GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
42Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...800.083     32.3     29     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
43Q9UK45    103   LSM7_HUMAN U6 snRNA-associated Sm-like protei...670.12     32.7     30     49GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
44Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...520.14     32     31     60GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
45Q9CQQ8    103   LSM7_MOUSE U6 snRNA-associated Sm-like protei...670.2     32.3     30     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
46Q97BU5    83   RUXX_THEVO Putative snRNP Sm-like protein OS=...890.27     31.6     30     51GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
47P57670    83   RUXX_THEAC Putative snRNP Sm-like protein OS=...890.27     31.6     27     48GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
48Q1ZXD5    94   NAA38_DICDI N-alpha-acetyltransferase 38, Nat...760.29     31.6     32     55GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
49P57743    89   LSM3_YEAST U6 snRNA-associated Sm-like protei...780.31     31.2     28     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
50Q2RJF9    84   HFQ_MOOTA Protein hfq OS=Moorella thermoaceti...470.37     31.2     43     57
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
51Q8PZZ9    72   RUXX_METMA Putative snRNP Sm-like protein OS=...800.43     30.8     28     53GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
52Q06217    110   SMD2_YEAST Small nuclear ribonucleoprotein Sm...780.89     30.8     24     53GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
53O74483    94   LSM8_SCHPO U6 snRNA-associated Sm-like protei...751     30     24     51GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
54P40204    77   RUXG_YEAST Small nuclear ribonucleoprotein G ...581.1     29.6     31     59GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
55Q24X67    83   HFQ_DESHY Protein hfq OS=Desulfitobacterium h...451.1     30     42     53
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
56B8FWE3    83   HFQ_DESHD Protein hfq OS=Desulfitobacterium h...451.2     29.6     42     53
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
57A5IZ67    227   TRMD_MYCAP tRNA (guanine-N(1)-)-methyltransfe...531.5     30.4     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.::GO:0052906; F:tRNA (guanine(37)-N(1))-methyltransferase activity; IEA:EC.
58O74966    77   RUXG_SCHPO Small nuclear ribonucleoprotein G ...571.5     29.3     25     63GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
59P77148    534   YDHS_ECOLI Uncharacterized protein ydhS OS=Es...211.5     30.8     57     81
60Q6BR90    85   LSM6_DEBHA U6 snRNA-associated Sm-like protei...692.1     29.3     25     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
61Q0STR1    80   HFQ_CLOPS Protein hfq OS=Clostridium perfring...532.2     28.9     36     58
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 84 31 - 60
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::