rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
31 | B6YUU5 | 78 | RUXX_THEON Putative snRNP Sm-like protein OS=... | 82 | 0.016 | 34.7 | 28 | 50 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 32 | Q9V0Y8 | 75 | RUXX_PYRAB Putative snRNP Sm-like protein OS=... | 79 | 0.019 | 34.3 | 28 | 52 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003676; F:nucleic acid binding; IEA:UniProtKB-KW. | | | | | | | | | | | 33 | O74016 | 75 | RUXX_PYRHO Putative snRNP Sm-like protein OS=... | 79 | 0.025 | 33.9 | 27 | 52 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 34 | A8MWD9 | 76 | RUXGL_HUMAN Small nuclear ribonucleoprotein G... | 59 | 0.025 | 33.9 | 29 | 56 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 35 | O82221 | 80 | RUXG_ARATH Probable small nuclear ribonucleop... | 54 | 0.027 | 33.9 | 30 | 57 | GO:0005829; C:cytosol; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 36 | O74499 | 113 | LSM7_SCHPO U6 snRNA-associated Sm-like protei... | 61 | 0.034 | 34.3 | 36 | 56 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.::GO:0005688; C:U6 snRNP; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; ISS:PomBase. | | | | | | | | | | GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0006402; P:mRNA catabolic process; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 37 | Q8U0P4 | 76 | RUXX_PYRFU Putative snRNP Sm-like protein OS=... | 79 | 0.04 | 33.5 | 28 | 52 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 38 | Q465S1 | 72 | RUXX_METBF Putative snRNP Sm-like protein OS=... | 80 | 0.059 | 32.7 | 29 | 54 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 39 | Q5JIE0 | 76 | RUXX_PYRKO Putative snRNP Sm-like protein OS=... | 79 | 0.071 | 32.7 | 28 | 52 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 40 | P24715 | 81 | RUXG_MEDSA Probable small nuclear ribonucleop... | 71 | 0.072 | 32.7 | 25 | 58 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 41 | Q9VXE0 | 76 | RUXG_DROME Probable small nuclear ribonucleop... | 59 | 0.075 | 32.7 | 31 | 61 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase. | 42 | Q8TL47 | 72 | RUXX_METAC Putative snRNP Sm-like protein OS=... | 80 | 0.083 | 32.3 | 29 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 43 | Q9UK45 | 103 | LSM7_HUMAN U6 snRNA-associated Sm-like protei... | 67 | 0.12 | 32.7 | 30 | 49 | GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB. | 44 | Q12U30 | 72 | RUXX_METBU Putative snRNP Sm-like protein OS=... | 52 | 0.14 | 32 | 31 | 60 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 45 | Q9CQQ8 | 103 | LSM7_MOUSE U6 snRNA-associated Sm-like protei... | 67 | 0.2 | 32.3 | 30 | 49 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 46 | Q97BU5 | 83 | RUXX_THEVO Putative snRNP Sm-like protein OS=... | 89 | 0.27 | 31.6 | 30 | 51 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 47 | P57670 | 83 | RUXX_THEAC Putative snRNP Sm-like protein OS=... | 89 | 0.27 | 31.6 | 27 | 48 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 48 | Q1ZXD5 | 94 | NAA38_DICDI N-alpha-acetyltransferase 38, Nat... | 76 | 0.29 | 31.6 | 32 | 55 | GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase. | 49 | P57743 | 89 | LSM3_YEAST U6 snRNA-associated Sm-like protei... | 78 | 0.31 | 31.2 | 28 | 55 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 50 | Q2RJF9 | 84 | HFQ_MOOTA Protein hfq OS=Moorella thermoaceti... | 47 | 0.37 | 31.2 | 43 | 57 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 51 | Q8PZZ9 | 72 | RUXX_METMA Putative snRNP Sm-like protein OS=... | 80 | 0.43 | 30.8 | 28 | 53 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | | | | | | | | | | | | 52 | Q06217 | 110 | SMD2_YEAST Small nuclear ribonucleoprotein Sm... | 78 | 0.89 | 30.8 | 24 | 53 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 53 | O74483 | 94 | LSM8_SCHPO U6 snRNA-associated Sm-like protei... | 75 | 1 | 30 | 24 | 51 | GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase. | 54 | P40204 | 77 | RUXG_YEAST Small nuclear ribonucleoprotein G ... | 58 | 1.1 | 29.6 | 31 | 59 | GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 55 | Q24X67 | 83 | HFQ_DESHY Protein hfq OS=Desulfitobacterium h... | 45 | 1.1 | 30 | 42 | 53 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 56 | B8FWE3 | 83 | HFQ_DESHD Protein hfq OS=Desulfitobacterium h... | 45 | 1.2 | 29.6 | 42 | 53 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. | 57 | A5IZ67 | 227 | TRMD_MYCAP tRNA (guanine-N(1)-)-methyltransfe... | 53 | 1.5 | 30.4 | 36 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:InterPro.::GO:0052906; F:tRNA (guanine(37)-N(1))-methyltransferase activity; IEA:EC. | | | | | | | | | | | 58 | O74966 | 77 | RUXG_SCHPO Small nuclear ribonucleoprotein G ... | 57 | 1.5 | 29.3 | 25 | 63 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase. | 59 | P77148 | 534 | YDHS_ECOLI Uncharacterized protein ydhS OS=Es... | 21 | 1.5 | 30.8 | 57 | 81 | | | | | | | | | | | | | | | | | | | | | | 60 | Q6BR90 | 85 | LSM6_DEBHA U6 snRNA-associated Sm-like protei... | 69 | 2.1 | 29.3 | 25 | 46 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW. | 61 | Q0STR1 | 80 | HFQ_CLOPS Protein hfq OS=Clostridium perfring... | 53 | 2.2 | 28.9 | 36 | 58 | | | | | | | | | | | GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.::GO:0006950; P:response to stress; IEA:UniProtKB-KW. |