Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR004W
Length:
254
Number of sequences:
5887
Description:
YOR004W UTP23 SGDID:S000005530, Chr XV from 333592-334356, Genome Release 64-1-1, Verified ORF, "Essential nucleolar protein that is a component of the SSU (small subunit) processome involved in 40S ribosomal subunit biogenesis; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12339    254   UTP23_YEAST rRNA-processing protein UTP23 OS=...2540     522     100     100GO:0005739; C:mitochondrion; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
2O74862    260   UTP23_SCHPO rRNA-processing protein utp23 OS=...2401e-60     198     48     63GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
3Q9BRU9    249   UTP23_HUMAN rRNA-processing protein UTP23 hom...2153e-22     96.3     32     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q08DU1    248   UTP23_BOVIN rRNA-processing protein UTP23 hom...2155e-21     92.8     31     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q9CX11    249   UTP23_MOUSE rRNA-processing protein UTP23 hom...1839e-19     86.3     30     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q5RFQ0    198   FCF1_PONAB rRNA-processing protein FCF1 homol...1360.0000006     52     26     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
7Q9Y324    198   FCF1_HUMAN rRNA-processing protein FCF1 homol...1360.0000006     52     26     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8Q32PD0    198   FCF1_BOVIN rRNA-processing protein FCF1 homol...1360.0000006     52     26     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
9Q55GM5    194   FCF1_DICDI rRNA-processing protein FCF1 homol...1570.0000007     52     25     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
10O13610    192   FCF1_SCHPO rRNA-processing protein fcf1 OS=Sc...1310.0000007     51.6     29     50GO:0005730; C:nucleolus; IDA:PomBase.::GO:0032040; C:small-subunit processome; ISS:PomBase.
GO:0006364; P:rRNA processing; ISS:PomBase.
11Q9CTH6    198   FCF1_MOUSE rRNA-processing protein FCF1 homol...1360.000001     51.6     26     50GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
12Q05498    189   FCF1_YEAST rRNA-processing protein FCF1 OS=Sa...1450.000002     50.4     25     49GO:0005730; C:nucleolus; IDA:SGD.::GO:0032040; C:small-subunit processome; IDA:SGD.
GO:0000480; P:endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000447; P:endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0000472; P:endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
13Q6VEU1    410   NOB1_RAT RNA-binding protein NOB1 OS=Rattus n...993.5     32.3     27     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
14Q9XTA5    823   HIF1A_BOVIN Hypoxia-inducible factor 1-alpha ...693.7     32.7     28     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0035035; F:histone acetyltransferase binding; ISS:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0004871; F:signal transducer activity; IEA:InterPro.::GO:0044212; F:transcription regulatory region DNA binding; ISS:UniProtKB.
GO:0071456; P:cellular response to hypoxia; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q0PGG7    823   HIF1A_BOSMU Hypoxia-inducible factor 1-alpha ...693.7     32.7     28     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0035035; F:histone acetyltransferase binding; ISS:UniProtKB.::GO:0046982; F:protein heterodimerization activity; ISS:UniProtKB.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:InterPro.::GO:0004871; F:signal transducer activity; IEA:InterPro.::GO:0044212; F:transcription regulatory region DNA binding; ISS:UniProtKB.
GO:0071456; P:cellular response to hypoxia; ISS:UniProtKB.::GO:0045893; P:positive regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
16Q16665    826   HIF1A_HUMAN Hypoxia-inducible factor 1-alpha ...694.1     32.3     28     49GO:0005737; C:cytoplasm; IDA:BHF-UCL.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005667; C:transcription factor complex; IPI:MGI.
GO:0035035; F:histone acetyltransferase binding; IPI:UniProtKB.::GO:0051879; F:Hsp90 protein binding; IDA:BHF-UCL.::GO:0046982; F:protein heterodimerization activity; IPI:UniProtKB.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.::GO:0003705; F:RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity; IDA:BHF-UCL.::GO:0004871; F:signal transducer activity; IEA:InterPro.::GO:0008134; F:transcription factor binding; IPI:BHF-UCL.::GO:0044212; F:transcription regulatory region DNA binding; IDA:UniProtKB.::GO:0031625; F:ubiquitin protein ligase binding; IPI:UniProtKB.
GO:0071456; P:cellular response to hypoxia; IDA:UniProtKB.::GO:0071347; P:cellular response to interleukin-1; IEP:BHF-UCL.::GO:0032963; P:collagen metabolic process; ISS:BHF-UCL.::GO:0002248; P:connective tissue replacement involved in inflammatory response wound healing; ISS:BHF-UCL.::GO:0051541; P:elastin metabolic process; ISS:BHF-UCL.::GO:0001837; P:epithelial to mesenchymal transition; ISS:BHF-UCL.::GO:0042789; P:mRNA transcription from RNA polymerase II promoter; IC:BHF-UCL.::GO:0007219; P:Notch signaling pathway; TAS:Reactome.::GO:0032364; P:oxygen homeostasis; IDA:HGNC.::GO:0045766; P:positive regulation of angiogenesis; IC:BHF-UCL.::GO:0032722; P:positive regulation of chemokine production; TAS:BHF-UCL.::GO:0070101; P:positive regulation of chemokine-mediated signaling pathway; IC:BHF-UCL.::GO:0001938; P:positive regulation of endothelial cell proliferation; IC:BHF-UCL.::GO:0010634; P:positive regulation of epithelial cell migration; ISS:BHF-UCL.::GO:0045648; P:positive regulation of erythrocyte differentiation; IC:BHF-UCL.::GO:0045821; P:positive regulation of glycolysis; IC:BHF-UCL.::GO:0046886; P:positive regulation of hormone biosynthetic process; IDA:BHF-UCL.::GO:0051000; P:positive regulation of nitric-oxide synthase activity; TAS:BHF-UCL.::GO:0010870; P:positive regulation of receptor biosynthetic process; IMP:BHF-UCL.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IGI:MGI.::GO:0030949; P:positive regulation of vascular endothelial growth factor receptor signaling pathway; IC:BHF-UCL.::GO:0010575; P:positive regulation vascular endothelial growth factor production; IDA:BHF-UCL.::GO:0043619; P:regulation of transcription from RNA polymerase II promoter in response to oxidative stress; IDA:BHF-UCL.::GO:0032909; P:regulation of transforming growth factor beta2 production; IMP:BHF-UCL.::GO:0010573; P:vascular endothelial growth factor production; IDA:BHF-UCL.
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