Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOR001W
Length:
733
Number of sequences:
5887
Description:
YOR001W RRP6 SGDID:S000005527, Chr XV from 326832-329033, Genome Release 64-1-1, Verified ORF, "Nuclear exosome exonuclease component; has 3'-5' exonuclease activity; involved in RNA processing, maturation, surveillance, degradation, tethering, and export; has similarity to E. coli RNase D and to human PM-Sc1 100 (EXOSC10); mutant displays reduced transcription elongation in the G-less-based run-on (GLRO) assay"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q12149    733   RRP6_YEAST Exosome complex exonuclease RRP6 O...7330     1496     100     100GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.
GO:0000175; F:3'-5'-exoribonuclease activity; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0071044; P:histone mRNA catabolic process; IMP:SGD.::GO:0071040; P:nuclear polyadenylation-dependent antisense transcript catabolic process; IMP:SGD.::GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IMP:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IMP:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:SGD.::GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IMP:SGD.::GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IMP:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IMP:SGD.::GO:0000973; P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery; IMP:SGD.::GO:0034473; P:U1 snRNA 3'-end processing; IMP:SGD.::GO:0034475; P:U4 snRNA 3'-end processing; IMP:SGD.::GO:0034476; P:U5 snRNA 3'-end processing; IMP:SGD.
2Q10146    777   RRP6_SCHPO Exosome complex exonuclease rrp6 O...5204e-111     361     39     60GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000175; F:3'-5'-exoribonuclease activity; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
3Q01780    885   EXOSX_HUMAN Exosome component 10 OS=Homo sapi...5901e-79     278     32     52GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0035327; C:transcriptionally active chromatin; IMP:UniProtKB.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0004532; F:exoribonuclease activity; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0071034; P:CUT catabolic process; IMP:UniProtKB.::GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.::GO:0000460; P:maturation of 5.8S rRNA; IMP:UniProtKB.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:UniProtKB.::GO:0071048; P:nuclear retention of unspliced pre-mRNA at the site of transcription; IMP:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IMP:UniProtKB.
4P56960    887   EXOSX_MOUSE Exosome component 10 OS=Mus muscu...5772e-79     278     33     51GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.::GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0009048; P:dosage compensation by inactivation of X chromosome; IMP:MGI.::GO:0071044; P:histone mRNA catabolic process; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.
5A5G127    392   RND_ACICJ Ribonuclease D OS=Acidiphilium cryp...2832e-20     97.4     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
6A9H9B7    393   RND_GLUDA Ribonuclease D OS=PAl5). GN=rnd Ord...1814e-17     87.4     30     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
7Q0BVP4    395   RND_GRABC Ribonuclease D OS=Granulibacter bet...2521e-16     86.3     27     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
8A6V8R6    376   RND_PSEA7 Ribonuclease D OS=Pseudomonas aerug...2980.000000000000006     80.9     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
9Q6G329    406   RND_BARHE Ribonuclease D OS=henselae). GN=rnd...2660.000000000000006     81.3     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
10P09155    375   RND_ECOLI Ribonuclease D OS=Escherichia coli ...3140.00000000000002     79     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IMP:EcoCyc.
11A7HYE5    384   RND_PARL1 Ribonuclease D OS=Parvibaculum lava...3220.00000000000003     79     25     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
12Q1QLI8    382   RND_NITHX Ribonuclease D OS=Nitrobacter hambu...1650.00000000000005     77.8     31     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
13B8EN54    399   RND_METSB Ribonuclease D OS=Methylocella silv...3050.00000000000005     78.2     25     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
14C9XUE4    369   RND_CROTZ Ribonuclease D OS=Cronobacter turic...3380.00000000000007     77.4     24     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
15Q28RA7    386   RND_JANSC Ribonuclease D OS=Jannaschia sp. (s...1800.0000000000001     77.4     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
16C6C608    374   RND_DICDC Ribonuclease D OS=Dickeya dadantii ...2930.00000000002     70.1     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
17Q5GZ75    363   RND_XANOR Ribonuclease D OS=Xanthomonas oryza...3270.00000000009     67.8     26     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
18A8GFH0    373   RND_SERP5 Ribonuclease D OS=Serratia proteama...2660.00000000009     67.8     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
19Q5NPM2    390   RND_ZYMMO Ribonuclease D OS=Zymomonas mobilis...1870.0000000001     67.8     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
20D4Z694    388   RND_SPHJU Ribonuclease D OS=Sphingobium japon...1750.000000008     62     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
21O67779    574   DPO1_AQUAE DNA polymerase I OS=Aquifex aeolic...1680.00000003     60.8     27     48GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
22A0KXU5    388   RND_SHESA Ribonuclease D OS=Shewanella sp. (s...3000.0000002     57.8     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
23Q6AJF4    374   RND_DESPS Ribonuclease D OS=Desulfotalea psyc...2650.0000003     57     24     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
24P44442    399   RND_HAEIN Ribonuclease D OS=Haemophilus influ...2780.000001     55.1     22     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
25A1SVE6    369   RND_PSYIN Ribonuclease D OS=Psychromonas ingr...2650.0004     47     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0033890; F:ribonuclease D activity; IEA:EC.
GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
26Q179T2    719   MUT7_AEDAE Probable exonuclease mut-7 homolog...1900.002     45.1     26     40GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
27Q9VIF1    625   MUT7_DROME Probable exonuclease mut-7 homolog...2100.01     42.7     26     40GO:0005622; C:intracellular; IEA:InterPro.
GO:0000175; F:3'-5'-exoribonuclease activity; IMP:FlyBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0010586; P:miRNA metabolic process; IMP:FlyBase.::GO:0031054; P:pre-miRNA processing; IMP:FlyBase.
28Q8N9H8    876   MUT7_HUMAN Probable exonuclease mut-7 homolog...1550.35     38.1     21     41GO:0005622; C:intracellular; IEA:InterPro.
GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
29A4W502    556   LIGB_ENT38 DNA ligase B OS=Enterobacter sp. (...1190.78     36.6     23     45
GO:0003911; F:DNA ligase (NAD+) activity; IEA:EC.
GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
30Q9SV41    497   2A5E_ARATH Serine/threonine protein phosphata...1241.3     35.8     28     40GO:0000159; C:protein phosphatase type 2A complex; IEA:InterPro.
GO:0005488; F:binding; IEA:InterPro.::GO:0008601; F:protein phosphatase type 2A regulator activity; IEA:InterPro.
GO:0007165; P:signal transduction; IEA:InterPro.
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