Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL142W
Length:
240
Number of sequences:
5887
Description:
YOL142W RRP40 SGDID:S000005502, Chr XV from 55558-56280, Genome Release 64-1-1, Verified ORF, "Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; has similarity to human hRrp40p (EXOSC3)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q08285    240   RRP40_YEAST Exosome complex component RRP40 O...2407e-179     498     100     100GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:SGD.::GO:0000176; C:nuclear exosome (RNase complex); IDA:SGD.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0030145; F:manganese ion binding; IDA:SGD.::GO:0003723; F:RNA binding; IDA:SGD.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.::GO:0070651; P:nonfunctional rRNA decay; IC:SGD.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; IC:SGD.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:SGD.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IDA:SGD.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IC:SGD.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; IC:SGD.::GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IC:SGD.
2O13903    240   RRP40_SCHPO Exosome complex component rrp40 O...2282e-45     158     38     59GO:0000177; C:cytoplasmic exosome (RNase complex); ISS:PomBase.::GO:0000176; C:nuclear exosome (RNase complex); ISS:PomBase.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0070651; P:nonfunctional rRNA decay; ISS:PomBase.::GO:0071042; P:nuclear polyadenylation-dependent mRNA catabolic process; ISS:PomBase.::GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; ISS:PomBase.::GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; ISS:PomBase.::GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; ISS:PomBase.::GO:0070481; P:nuclear-transcribed mRNA catabolic process, non-stop decay; ISS:PomBase.
3Q7TQK4    274   EXOS3_MOUSE Exosome complex component RRP40 O...1758e-33     125     38     57GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045190; P:isotype switching; IMP:UniProtKB.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q7KWX9    237   EXOS3_DICDI Putative exosome complex componen...2083e-32     123     35     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q3T0E1    275   EXOS3_BOVIN Exosome complex component RRP40 O...1885e-32     123     37     54GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q9NQT5    275   EXOS3_HUMAN Exosome complex component RRP40 O...1882e-31     121     36     54GO:0000177; C:cytoplasmic exosome (RNase complex); IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0000176; C:nuclear exosome (RNase complex); IDA:UniProtKB.::GO:0005730; C:nucleolus; IDA:UniProtKB.::GO:0035327; C:transcriptionally active chromatin; IMP:UniProtKB.
GO:0000175; F:3'-5'-exoribonuclease activity; NAS:UniProtKB.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0071034; P:CUT catabolic process; IMP:UniProtKB.::GO:0045006; P:DNA deamination; IDA:UniProtKB.::GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; IMP:UniProtKB.::GO:0045190; P:isotype switching; ISS:UniProtKB.::GO:0006364; P:rRNA processing; IDA:UniProtKB.
7E0SQX5    253   ECR1_IGNAA Probable exosome complex RNA-bindi...1460.000001     52     27     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
8A9A5C8    226   ECR1_NITMS Probable exosome complex RNA-bindi...1820.000002     50.8     24     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
9O29758    223   ECR1_ARCFU Probable exosome complex RNA-bindi...2080.00003     47.4     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
10Q4JB26    249   ECR1_SULAC Probable exosome complex RNA-bindi...1680.0002     45.1     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
11B1L6N8    228   ECR1_KORCO Probable exosome complex RNA-bindi...1680.0003     44.7     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
12Q6L222    230   ECR1_PICTO Probable exosome complex RNA-bindi...1450.0003     44.7     24     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
13A5UJS0    298   ECR1_METS3 Probable exosome complex RNA-bindi...1380.001     43.1     24     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
14Q975G7    247   ECR1_SULTO Probable exosome complex RNA-bindi...1420.001     42.4     27     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
15Q12ZB8    263   ECR1_METBU Probable exosome complex RNA-bindi...1380.001     42.4     26     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
16Q97BZ6    236   ECR1_THEVO Probable exosome complex RNA-bindi...2400.002     42.4     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
17D5U396    247   ECR1_THEAM Probable exosome complex RNA-bindi...1470.007     40.4     23     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
18Q9UXC4    249   ECR1_SULSO Probable exosome complex RNA-bindi...1450.016     39.3     24     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
19Q13868    293   EXOS2_HUMAN Exosome complex component RRP4 OS...1450.037     38.1     26     38GO:0005829; C:cytosol; TAS:Reactome.::GO:0000178; C:exosome (RNase complex); IDA:UniProtKB.::GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; TAS:ProtInc.::GO:0008312; F:7S RNA binding; TAS:ProtInc.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0030307; P:positive regulation of cell growth; IMP:UniProtKB.::GO:0006364; P:rRNA processing; TAS:ProtInc.
20Q9HIP3    236   ECR1_THEAC Probable exosome complex RNA-bindi...1370.073     37.4     21     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
21Q9YC02    235   ECR1_AERPE Probable exosome complex RNA-bindi...1510.17     36.2     23     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
22Q469M4    260   ECR1_METBF Probable exosome complex RNA-bindi...1350.19     36.2     25     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
23Q2NEX6    222   ECR1_METST Probable exosome complex RNA-bindi...1370.19     35.8     26     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
24Q9V120    265   ECR1_PYRAB Probable exosome complex RNA-bindi...1710.2     35.8     23     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:HAMAP.
GO:0006401; P:RNA catabolic process; IEA:HAMAP.
25Q5JIR5    257   ECR1_PYRKO Probable exosome complex RNA-bindi...1900.21     35.8     24     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
26Q8U0L8    264   ECR1_PYRFU Probable exosome complex RNA-bindi...1700.21     35.8     21     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
27Q8TYC0    239   ECR1_METKA Probable exosome complex RNA-bindi...2020.33     35     19     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28Q8PTT9    260   ECR1_METMA Probable exosome complex RNA-bindi...1590.44     35     26     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
29O59221    265   ECR1_PYRHO Probable exosome complex RNA-bindi...1770.7     34.3     22     40GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
30E3GZ90    222   ECR1_METFV Probable exosome complex RNA-bindi...1401.1     33.5     24     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0000178; C:exosome (RNase complex); IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
31Q8NK02    526   CBHB_EMENI 1,4-beta-D-glucan cellobiohydrolas...621.7     33.5     31     58GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO:0016162; F:cellulose 1,4-beta-cellobiosidase activity; IDA:UniProtKB.::GO:0030248; F:cellulose binding; IEA:InterPro.
GO:0030245; P:cellulose catabolic process; IEA:UniProtKB-KW.
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