Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL138C
Length:
1341
Number of sequences:
5887
Description:
YOL138C RTC1 SGDID:S000005498, Chr XV from 65350-61325, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the SEA (Seh1-associated) complex, a coatomer-related complex that associates dynamically with the vacuole; null mutation suppresses cdc13-1 temperature sensitivity; has N-terminal WD-40 repeats and a C-terminal RING motif"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
331O74845    564   YCY9_SCHPO Uncharacterized WD repeat-containi...1513.4     35.8     21     42GO:0005829; C:cytosol; IDA:PomBase.::GO:0070210; C:Rpd3L-Expanded complex; IDA:PomBase.::GO:0034967; C:Set3 complex; IDA:PomBase.
GO:0006338; P:chromatin remodeling; IC:PomBase.::GO:0006342; P:chromatin silencing; ISS:PomBase.::GO:0016575; P:histone deacetylation; ISS:PomBase.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; ISS:PomBase.
332P53804    2025   TTC3_HUMAN E3 ubiquitin-protein ligase TTC3 O...473.4     35.8     32     51GO:0005739; C:mitochondrion; IDA:HPA.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0070936; P:protein K48-linked ubiquitination; IDA:UniProtKB.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IDA:UniProtKB.
333Q9P7I3    651   MDV1_SCHPO Mitochondrial division protein 1 O...563.4     35.8     43     55GO:0030015; C:CCR4-NOT core complex; NAS:PomBase.::GO:0005741; C:mitochondrial outer membrane; ISS:PomBase.
GO:0051020; F:GTPase binding; NAS:PomBase.
GO:0000266; P:mitochondrial fission; ISS:PomBase.::GO:0000002; P:mitochondrial genome maintenance; ISS:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; ISS:PomBase.::GO:0006354; P:transcription elongation, DNA-dependent; IC:PomBase.
334B0BNA7    325   EIF3I_RAT Eukaryotic translation initiation f...1533.4     35.4     20     45GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
335Q5BJQ6    431   CSTF1_RAT Cleavage stimulation factor subunit...373.4     35.4     38     70GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
336Q99LC2    431   CSTF1_MOUSE Cleavage stimulation factor subun...373.4     35.4     38     70GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
337Q4J8M3    571   SYM_SULAC Methionine--tRNA ligase OS=NBRC 151...1103.4     35.8     27     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.::GO:0004825; F:methionine-tRNA ligase activity; IEA:EC.
GO:0006431; P:methionyl-tRNA aminoacylation; IEA:InterPro.
338Q5M9G8    549   DCA11_RAT DDB1- and CUL4-associated factor 11...2183.4     35.4     22     39GO:0080008; C:CUL4 RING ubiquitin ligase complex; ISS:UniProtKB.
339P97865    318   PEX7_MOUSE Peroxisomal targeting signal 2 rec...1113.4     35.4     25     45GO:0005829; C:cytosol; IDA:MGI.::GO:0005777; C:peroxisome; IEA:UniProtKB-SubCell.
GO:0001958; P:endochondral ossification; IMP:MGI.::GO:0006635; P:fatty acid beta-oxidation; IMP:MGI.::GO:0001764; P:neuron migration; IMP:MGI.::GO:0016558; P:protein import into peroxisome matrix; IMP:MGI.
340P90917    412   RBA1_CAEEL Probable histone-binding protein r...1253.7     35.4     26     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:WormBase.
GO:0001708; P:cell fate specification; IMP:WormBase.::GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0016246; P:RNA interference; IMP:WormBase.::GO:0045138; P:tail tip morphogenesis; IMP:WormBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
341Q5XGI5    314   WDR83_XENTR WD repeat domain-containing prote...1033.6     35     22     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
342Q66J51    325   EIF3I_XENLA Eukaryotic translation initiation...1543.6     35     21     46GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
343Q2KJJ5    800   TBL3_BOVIN Transducin beta-like protein 3 OS=...773.7     35.8     22     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:InterPro.
344Q5AZX0    567   PFS2_EMENI Polyadenylation factor subunit 2 O...1623.7     35.4     22     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
345Q7Z5U6    358   WDR53_HUMAN WD repeat-containing protein 53 O...1833.8     35.4     25     39
346A5DJX5    507   LIS1_PICGU Nuclear distribution protein PAC1 ...853.8     35.4     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
347Q11176    611   WDR1_CAEEL Actin-interacting protein 1 OS=Cae...1463.8     35.4     27     37GO:0042643; C:actomyosin, actin part; IDA:WormBase.::GO:0030016; C:myofibril; IDA:WormBase.::GO:0016528; C:sarcoplasm; IDA:WormBase.
GO:0051015; F:actin filament binding; IDA:WormBase.
GO:0051016; P:barbed-end actin filament capping; ISS:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0018991; P:oviposition; IMP:WormBase.::GO:0030836; P:positive regulation of actin filament depolymerization; IDA:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0040017; P:positive regulation of locomotion; IMP:WormBase.
348Q6RI45    1802   BRWD3_HUMAN Bromodomain and WD repeat-contain...973.8     35.8     26     47
GO:0007010; P:cytoskeleton organization; IMP:UniProtKB.::GO:0008360; P:regulation of cell shape; IMP:UniProtKB.
349P59235    380   NUP43_MOUSE Nucleoporin Nup43 OS=Mus musculus...633.8     35.4     32     57GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0031080; C:Nup107-160 complex; ISS:UniProtKB.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007059; P:chromosome segregation; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.
350P87060    775   POP1_SCHPO WD repeat-containing protein pop1 ...793.9     35.4     30     52GO:0005634; C:nucleus; IDA:PomBase.::GO:0019005; C:SCF ubiquitin ligase complex; IDA:PomBase.
GO:0030674; F:protein binding, bridging; IPI:PomBase.
GO:0006995; P:cellular response to nitrogen starvation; IGI:PomBase.::GO:0000747; P:conjugation with cellular fusion; IMP:PomBase.::GO:0008054; P:cyclin catabolic process; IMP:PomBase.::GO:0007346; P:regulation of mitotic cell cycle; IC:PomBase.
351A1CUD6    467   LIS11_ASPCL Nuclear distribution protein nudF...2023.9     35.4     21     41GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
352Q6FNU4    1281   SEC31_CANGA Protein transport protein SEC31 O...634     35.4     32     54GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:InterPro.
GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:InterPro.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
353A1CGS0    295   SEC13_ASPCL Protein transport protein sec13 O...1234     35     27     43GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.::GO:0012507; C:ER to Golgi transport vesicle membrane; IEA:UniProtKB-SubCell.::GO:0005643; C:nuclear pore; IEA:UniProtKB-SubCell.
GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0015031; P:protein transport; IEA:UniProtKB-KW.::GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
354P0CS36    435   HAT2_CRYNJ Histone acetyltransferase type B s...1814.1     35.4     20     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
355P0CS37    435   HAT2_CRYNB Histone acetyltransferase type B s...1814.1     35.4     20     38GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0016568; P:chromatin modification; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
356A3LQ86    467   YTM1_PICST Ribosome biogenesis protein YTM1 O...694.1     35.4     28     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
357Q8C0P5    524   COR2A_MOUSE Coronin-2A OS=Mus musculus (Mouse...864.2     35.4     28     50GO:0015629; C:actin cytoskeleton; IBA:RefGenome.::GO:0017053; C:transcriptional repressor complex; IBA:RefGenome.
GO:0051015; F:actin filament binding; IBA:RefGenome.
GO:0030036; P:actin cytoskeleton organization; IBA:RefGenome.
358Q0U1B1    462   LIS1_PHANO Nuclear distribution protein PAC1 ...2084.2     35.4     21     40GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
359C5PFX0    471   LIS1_COCP7 Nuclear distribution protein PAC1 ...2034.3     35.4     23     39GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005874; C:microtubule; IEA:UniProtKB-KW.::GO:0000922; C:spindle pole; IEA:UniProtKB-SubCell.
GO:0051301; P:cell division; IEA:UniProtKB-KW.::GO:0007067; P:mitosis; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
360Q8C4J7    801   TBL3_MOUSE Transducin beta-like protein 3 OS=...634.3     35.4     25     51GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0032040; C:small-subunit processome; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:InterPro.
361Q9D994    303   WDR38_MOUSE WD repeat-containing protein 38 O...1734.4     35     23     42
records
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