Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL123W
Length:
534
Number of sequences:
5887
Description:
YOL123W HRP1 SGDID:S000005483, Chr XV from 87844-89448, Genome Release 64-1-1, Verified ORF, "Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
541Q54Y98    326   TRA2_DICDI Transformer-2 protein homolog OS=D...790.002     43.9     33     56GO:0005634; C:nucleus; ISS:dictyBase.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
542Q9ZR40    573   U2A2B_NICPL Splicing factor U2af large subuni...550.003     43.9     33     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
543O23212    573   U2A2A_ARATH Splicing factor U2af large subuni...550.004     43.5     33     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0042742; P:defense response to bacterium; IEP:TAIR.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
544Q4WJT7    825   MRD1_ASPFU Multiple RNA-binding domain-contai...551.4     35.4     29     51GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
545Q8WXF0    261   SRS12_HUMAN Serine/arginine-rich splicing fac...780.007     42     31     54GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0050733; F:RS domain binding; NAS:UniProtKB.::GO:0051082; F:unfolded protein binding; NAS:UniProtKB.
GO:0000244; P:assembly of spliceosomal tri-snRNP; NAS:UniProtKB.::GO:0016482; P:cytoplasmic transport; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; IDA:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.
546Q7TN98    729   CPEB4_MOUSE Cytoplasmic polyadenylation eleme...1960.002     44.7     22     40GO:0045202; C:synapse; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI.
547A2VDB3    392   RBM42_XENLA RNA-binding protein 42 OS=Xenopus...870.099     38.9     30     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
548Q9GRW7    697   NONA_DROVI Protein no-on-transient A OS=Droso...1840.002     44.7     24     43
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0050896; P:response to stimulus; IEA:UniProtKB-KW.::GO:0007601; P:visual perception; IEA:UniProtKB-KW.
549Q2R0Q1    574   U2A2A_ORYSJ Splicing factor U2af large subuni...490.008     42.7     33     59GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
550Q8NE35    698   CPEB3_HUMAN Cytoplasmic polyadenylation eleme...1960.002     44.3     22     41
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
551Q9U1N0    535   HRP65_CHITE Hrp65 protein OS=Chironomus tenta...1320.002     44.3     27     47GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005856; C:cytoskeleton; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006406; P:mRNA export from nucleus; NAS:UniProtKB.
552Q17RY0    729   CPEB4_HUMAN Cytoplasmic polyadenylation eleme...1960.002     44.3     22     40
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
553P57052    281   RBM11_HUMAN Putative RNA-binding protein 11 O...2510.024     40.4     24     40
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
554Q6CEW9    828   MRD1_YARLI Multiple RNA-binding domain-contai...1510.045     40.4     25     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
555Q75BJ7    426   NOP12_ASHGO Nucleolar protein 12 OS=Y-1056) (...570.002     43.9     28     65GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
556P97855    465   G3BP1_MOUSE Ras GTPase-activating protein-bin...670.06     39.7     28     57GO:0005829; C:cytosol; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0004386; F:helicase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006810; P:transport; IEA:UniProtKB-KW.
557P52299    153   NCBP2_XENLA Nuclear cap-binding protein subun...870.002     42     26     53GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005845; C:mRNA cap binding complex; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0000340; F:RNA 7-methylguanosine cap binding; ISS:UniProtKB.
GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; ISS:UniProtKB.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0046833; P:positive regulation of RNA export from nucleus; IDA:UniProtKB.::GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IDA:UniProtKB.::GO:0006408; P:snRNA export from nucleus; IDA:UniProtKB.
558Q4PC17    858   MRD1_USTMA Multiple RNA-binding domain-contai...620.51     37     31     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
559Q66KL9    392   RBM42_XENTR RNA-binding protein 42 OS=Xenopus...480.12     38.5     33     67GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
560O13845    603   RSD1_SCHPO RNA-binding protein rsd1 OS=Schizo...1520.003     44.3     24     42GO:0005681; C:spliceosomal complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
561Q80VC6    287   TSAP1_MOUSE tRNA selenocysteine 1-associated ...1440.003     43.5     27     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0001514; P:selenocysteine incorporation; IDA:HGNC.
562Q9ZR39    555   U2A2A_NICPL Splicing factor U2af large subuni...550.003     43.9     33     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
563A6NDY0    278   EPAB2_HUMAN Embryonic polyadenylate-binding p...1310.27     37.4     21     42GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
564Q7TN99    716   CPEB3_MOUSE Cytoplasmic polyadenylation eleme...1960.003     43.9     22     41GO:0045202; C:synapse; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:MGI.
GO:0017148; P:negative regulation of translation; IMP:MGI.
565Q44556    94   RBPD_NOSS1 Putative RNA-binding protein rbpD ...860.7     33.9     24     50
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
566Q7SXN4    635   CPEB4_DANRE Cytoplasmic polyadenylation eleme...1960.003     43.9     22     40
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
567Q8BP71    449   RFOX2_MOUSE RNA binding protein fox-1 homolog...1050.013     42     26     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0003714; F:transcription corepressor activity; ISS:UniProtKB.::GO:0008134; F:transcription factor binding; ISS:UniProtKB.
GO:0030520; P:intracellular estrogen receptor signaling pathway; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:BHF-UCL.::GO:0010724; P:regulation of definitive erythrocyte differentiation; IDA:BHF-UCL.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
568Q9UT83    609   MUG28_SCHPO Meiotically up-regulated gene 28 ...667     33.1     29     52GO:0005619; C:ascospore wall; IDA:PomBase.::GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005628; C:prospore membrane; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031321; P:ascospore-type prospore assembly; IMP:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.
569A1A5R1    432   RFOX2_RAT RNA binding protein fox-1 homolog 2...1050.013     41.6     26     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0003714; F:transcription corepressor activity; ISS:UniProtKB.::GO:0008134; F:transcription factor binding; ISS:UniProtKB.
GO:0030520; P:intracellular estrogen receptor signaling pathway; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0045892; P:negative regulation of transcription, DNA-dependent; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
570Q2L4W6    567   SPO5_SCHPO Sporulation-specific protein 5 OS=...1530.004     43.5     24     43GO:0005829; C:cytosol; IDA:PomBase.::GO:0033620; C:Mei2 nuclear dot; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0032120; P:ascospore-type prospore membrane assembly; IMP:PomBase.::GO:0031322; P:ascospore-type prospore-specific spindle pole body remodeling; IMP:PomBase.::GO:0007135; P:meiosis II; TAS:PomBase.::GO:0006998; P:nuclear envelope organization; IMP:PomBase.::GO:0060903; P:positive regulation of meiosis I; IEP:PomBase.::GO:0007131; P:reciprocal meiotic recombination; IMP:PomBase.
571Q4P7G1    308   EIF3G_USTMA Eukaryotic translation initiation...452     34.7     27     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
records
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