Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL123W
Length:
534
Number of sequences:
5887
Description:
YOL123W HRP1 SGDID:S000005483, Chr XV from 87844-89448, Genome Release 64-1-1, Verified ORF, "Subunit of cleavage factor I, a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
211Q0U1G2    744   PABP_PHANO Polyadenylate-binding protein, cyt...1540.00005     49.7     23     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
212Q24668    354   SXL_DROSU Protein sex-lethal OS=Drosophila su...790.0006     45.8     30     49
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
213P23246    707   SFPQ_HUMAN Splicing factor, proline- and glut...1550.000000002     63.5     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016363; C:nuclear matrix; IDA:BHF-UCL.::GO:0042382; C:paraspeckles; IDA:BHF-UCL.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:BHF-UCL.::GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
214Q5PQP1    403   RBMS1_RAT RNA-binding motif, single-stranded-...1490.000000002     63.2     27     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
215Q7SZT7    400   ELAV4_XENLA ELAV-like protein 4 OS=Xenopus la...740.34     37.4     31     46GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
216A4QNI8    400   ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tr...740.35     37     31     46GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
217Q9SVM8    158   GRP2_ARATH Glycine-rich RNA-binding protein 2...790.00002     48.5     30     56GO:0005739; C:mitochondrion; IDA:TAIR.
GO:0005524; F:ATP binding; IDA:TAIR.::GO:0005507; F:copper ion binding; IDA:TAIR.::GO:0003690; F:double-stranded DNA binding; IDA:TAIR.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:TAIR.
GO:0009409; P:response to cold; IMP:TAIR.::GO:0006970; P:response to osmotic stress; IMP:TAIR.::GO:0009845; P:seed germination; IMP:TAIR.
218Q91W59    403   RBMS1_MOUSE RNA-binding motif, single-strande...1490.000000003     62.8     27     50GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
219P0DJD4    496   RBY1C_HUMAN RNA-binding motif protein, Y chro...3160.002     44.3     23     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
220A6NDE4    496   RBY1B_HUMAN RNA-binding motif protein, Y chro...3110.006     43.1     22     40GO:0005634; C:nucleus; TAS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0008584; P:male gonad development; IMP:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IDA:UniProtKB.::GO:0007283; P:spermatogenesis; TAS:UniProtKB.
221A6NEQ0    496   RBY1E_HUMAN RNA-binding motif protein, Y chro...3110.005     43.1     22     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
222P0C7P1    496   RBY1D_HUMAN RNA-binding motif protein, Y chro...3110.005     43.1     22     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
223P0DJD3    496   RBY1A_HUMAN RNA-binding motif protein, Y chro...3110.005     43.1     22     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
224Q15415    496   RBY1F_HUMAN RNA-binding motif protein, Y chro...3110.011     42     22     40GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; NAS:UniProtKB.
225P82277    260   RRP2_SPIOL 30S ribosomal protein 2, chloropla...760.00007     48.1     32     57GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005840; C:ribosome; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
226Q6PF35    489   CEL1B_XENLA CUGBP Elav-like family member 1-B...1431.6     35     23     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
227P49310    166   GRP1_SINAL Glycine-rich RNA-binding protein G...480.000001     52.4     44     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
228A4QUF0    762   PABP_MAGO7 Polyadenylate-binding protein, cyt...1570.0000008     55.5     25     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0043581; P:mycelium development; IEP:PAMGO_MGG.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
229P49311    169   GRP2_SINAL Glycine-rich RNA-binding protein G...480.000001     52     44     73GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
230P19339    354   SXL_DROME Protein sex-lethal OS=Drosophila me...1740.0003     46.6     24     39GO:0043234; C:protein complex; IPI:FlyBase.
GO:0008083; F:growth factor activity; IDA:FlyBase.::GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; IDA:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:FlyBase.::GO:0000900; F:translation repressor activity, nucleic acid binding; TAS:FlyBase.
GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0007549; P:dosage compensation; NAS:FlyBase.::GO:0019099; P:female germ-line sex determination; TAS:FlyBase.::GO:0019101; P:female somatic sex determination; TAS:FlyBase.::GO:0007281; P:germ cell development; TAS:FlyBase.::GO:0007446; P:imaginal disc growth; IMP:FlyBase.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; TAS:FlyBase.::GO:0009994; P:oocyte differentiation; IDA:FlyBase.::GO:0007131; P:reciprocal meiotic recombination; TAS:FlyBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007541; P:sex determination, primary response to X:A ratio; TAS:FlyBase.::GO:0007548; P:sex differentiation; NAS:FlyBase.::GO:0007224; P:smoothened signaling pathway; IDA:FlyBase.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
231Q9WX37    99   RBPE_NOSS1 Putative RNA-binding protein rbpE ...980.00000006     55.5     34     57
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
232Q8VC70    383   RBMS2_MOUSE RNA-binding motif, single-strande...650.023     40.8     26     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
233Q3ZC34    407   RBMS2_BOVIN RNA-binding motif, single-strande...1600.000000005     62     25     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
234O14102    335   SAP49_SCHPO Spliceosome-associated protein 49...1570.000000005     61.6     30     46GO:0005829; C:cytosol; IDA:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; TAS:PomBase.
235Q3MHX3    362   RBM4_BOVIN RNA-binding protein 4 OS=Bos tauru...1630.000000005     61.6     23     47GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0016607; C:nuclear speck; ISS:UniProtKB.::GO:0005730; C:nucleolus; ISS:UniProtKB.
GO:0035198; F:miRNA binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0032922; P:circadian regulation of gene expression; ISS:UniProtKB.::GO:0043153; P:entrainment of circadian clock by photoperiod; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0032055; P:negative regulation of translation in response to stress; ISS:UniProtKB.::GO:0035278; P:negative regulation of translation involved in gene silencing by miRNA; ISS:UniProtKB.::GO:0045947; P:negative regulation of translational initiation; ISS:UniProtKB.::GO:0051149; P:positive regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0046822; P:regulation of nucleocytoplasmic transport; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0051403; P:stress-activated MAPK cascade; ISS:UniProtKB.
236Q9IBD1    452   CELF3_DANRE CUGBP Elav-like family member 3 O...800.007     42.7     29     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.
237P60050    382   PABP5_PONPY Polyadenylate-binding protein 5 O...710.57     36.6     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
238P60049    382   PABP5_PANTR Polyadenylate-binding protein 5 O...710.57     36.6     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
239P60048    382   PABP5_HYLLA Polyadenylate-binding protein 5 O...710.57     36.6     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
240Q96DU9    382   PABP5_HUMAN Polyadenylate-binding protein 5 O...710.57     36.6     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
241P60047    382   PABP5_GORGO Polyadenylate-binding protein 5 O...710.57     36.6     27     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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