Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL080C
Length:
289
Number of sequences:
5887
Description:
YOL080C REX4 SGDID:S000005440, Chr XV from 181427-180558, Genome Release 64-1-1, reverse complement, Verified ORF, "Putative RNA exonuclease possibly involved in pre-rRNA processing and ribosome assembly"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31A3KPE8    409   SDN1_ARATH Small RNA degrading nuclease 1 OS=...1731e-18     88.2     36     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0008408; F:3'-5' exonuclease activity; IDA:TAIR.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0010587; P:miRNA catabolic process; IDA:TAIR.
32Q5APK0    1190   PAN2_CANAL PAB-dependent poly(A)-specific rib...2001e-17     87.4     32     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
33Q9FFG1    466   SDN2_ARATH Small RNA degrading nuclease 2 OS=...1617e-17     84     38     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
34Q8RXK2    782   SDN3_ARATH Small RNA degrading nuclease 3 OS=...1718e-17     84.3     35     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
35Q54U94    298   REXO4_DICDI RNA exonuclease 4 OS=Dictyosteliu...1757e-16     79     32     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
36Q5AL29    404   REXO3_CANAL RNA exonuclease 3 OS=Candida albi...1659e-16     80.1     35     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
37A5E1W0    1234   PAN2_LODEL PAB-dependent poly(A)-specific rib...2259e-16     81.3     29     43GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
38P53010    1115   PAN2_YEAST PAB-dependent poly(A)-specific rib...2510.000000000000002     80.1     26     46GO:0031251; C:PAN complex; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0031124; P:mRNA 3'-end processing; IMP:SGD.::GO:0006301; P:postreplication repair; IGI:SGD.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
39Q6FS70    1093   PAN2_CANGA PAB-dependent poly(A)-specific rib...2080.00000000000001     77.8     30     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
40Q6CFE7    757   REXO3_YARLI RNA exonuclease 3 OS=lipolytica)....1660.00000000000003     76.3     34     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
41Q6FIU7    398   REXO3_CANGA RNA exonuclease 3 OS=NRRL Y-65) (...1580.00000000000005     75.1     34     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
42Q12090    404   REXO3_YEAST RNA exonuclease 3 OS=Saccharomyce...1560.00000000000006     74.7     35     53GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.
GO:0000175; F:3'-5'-exoribonuclease activity; IMP:SGD.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0043628; P:ncRNA 3'-end processing; IMP:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
43O94443    631   YFE9_SCHPO Uncharacterized exonuclease C637.0...1620.00000000000007     75.1     36     51GO:0005634; C:nucleus; IDA:PomBase.
GO:0008408; F:3'-5' exonuclease activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0034415; P:tRNA 3'-trailer cleavage, exonucleolytic; ISS:PomBase.::GO:0034476; P:U5 snRNA 3'-end processing; ISS:PomBase.
44A5DAD0    1098   PAN2_PICGU PAB-dependent poly(A)-specific rib...1930.0000000000001     74.3     32     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
45Q8L7M4    567   SDN5_ARATH Small RNA degrading nuclease 5 OS=...1550.0000000000002     73.9     34     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
46Q750A5    382   REXO3_ASHGO RNA exonuclease 3 OS=Y-1056) (Yea...1560.0000000000003     72.4     37     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
47Q6CJB5    478   REXO3_KLULA RNA exonuclease 3 OS=1267 / NRRL ...1600.0000000000003     72.8     37     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
48Q754X1    1162   PAN2_ASHGO PAB-dependent poly(A)-specific rib...1960.0000000000004     72.8     29     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
49Q2T9U5    783   REXON_BOVIN Putative RNA exonuclease NEF-sp O...1930.0000000000005     72.4     33     47
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
50Q6CMN5    1144   PAN2_KLULA PAB-dependent poly(A)-specific rib...2370.0000000000006     72.4     27     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
51Q9P7H2    540   REXO3_SCHPO RNA exonuclease 3 OS=Schizosaccha...1760.000000000001     71.2     33     53GO:0005739; C:mitochondrion; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0008408; F:3'-5' exonuclease activity; ISS:PomBase.::GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); ISS:PomBase.::GO:0034476; P:U5 snRNA 3'-end processing; ISS:PomBase.
52Q504Q3    1202   PAN2_HUMAN PAB-dependent poly(A)-specific rib...2060.000000000001     71.6     29     45GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; TAS:Reactome.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
53Q8BGF7    1200   PAN2_MOUSE PAB-dependent poly(A)-specific rib...2060.000000000002     70.9     29     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
54Q6IE70    1205   PAN2_RAT PAB-dependent poly(A)-specific ribon...1900.000000000004     70.1     29     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
55A3LRV8    1183   PAN2_PICST PAB-dependent poly(A)-specific rib...1950.000000000006     69.3     30     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
56Q4R9F7    772   REXON_MACFA Putative RNA exonuclease NEF-sp O...1570.00000000001     68.6     35     53GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
57Q96IC2    774   REXON_HUMAN Putative RNA exonuclease NEF-sp O...1610.00000000001     68.2     35     53GO:0005730; C:nucleolus; IDA:LIFEdb.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
58A1A5R7    754   REXON_RAT Putative RNA exonuclease NEF-sp OS=...1560.00000000002     67.8     35     50
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
59A0PJM3    583   GORL_HUMAN Putative exonuclease GOR-like prot...1710.00000000002     67.4     32     51GO:0005622; C:intracellular; IEA:InterPro.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
60P48778    690   GOR_PANTR Exonuclease GOR OS=Pan troglodytes ...1710.00000000003     67.4     32     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.::GO:0003676; F:nucleic acid binding; IEA:InterPro.
61Q4WHP6    1155   PAN2_ASPFU PAB-dependent poly(A)-specific rib...1880.00000000003     67.4     32     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0004535; F:poly(A)-specific ribonuclease activity; IEA:EC.::GO:0004221; F:ubiquitin thiolesterase activity; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
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