rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
241 | Q29RT0 | 396 | RBMX_BOVIN RNA-binding motif protein, X chrom... | 62 | 0.019 | 40.8 | 32 | 55 | GO:0071013; C:catalytic step 2 spliceosome; ISS:UniProtKB.::GO:0070062; C:extracellular vesicular exosome; ISS:UniProtKB.::GO:0005719; C:nuclear euchromatin; ISS:UniProtKB. | | | | | | | | | | GO:0003682; F:chromatin binding; ISS:UniProtKB.::GO:0001047; F:core promoter binding; ISS:UniProtKB.::GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0071347; P:cellular response to interleukin-1; ISS:UniProtKB.::GO:0006509; P:membrane protein ectodomain proteolysis; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; ISS:UniProtKB.::GO:0051260; P:protein homooligomerization; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB. | 242 | P28644 | 233 | ROC1_SPIOL 28 kDa ribonucleoprotein, chloropl... | 160 | 1.3 | 34.7 | 23 | 38 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 243 | O13829 | 261 | RU17_SCHPO U1 small nuclear ribonucleoprotein... | 71 | 0.02 | 40.4 | 31 | 55 | GO:0000243; C:commitment complex; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase. | | | | | | | | | | GO:0003729; F:mRNA binding; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030619; F:U1 snRNA binding; ISS:PomBase. | | | | | | | | | | GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:PomBase. | 244 | Q4WJT7 | 825 | MRD1_ASPFU Multiple RNA-binding domain-contai... | 47 | 0.021 | 41.2 | 38 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 245 | P19683 | 315 | ROC4_NICSY 31 kDa ribonucleoprotein, chloropl... | 57 | 0.022 | 40.4 | 32 | 54 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 246 | P49314 | 292 | ROC2_NICPL 31 kDa ribonucleoprotein, chloropl... | 62 | 3.9 | 33.1 | 24 | 52 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 247 | Q43349 | 342 | ROC2_ARATH 29 kDa ribonucleoprotein, chloropl... | 57 | 3.6 | 33.5 | 32 | 49 | GO:0009570; C:chloroplast stroma; IDA:TAIR.::GO:0009534; C:chloroplast thylakoid; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:TAIR. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 248 | Q15427 | 424 | SF3B4_HUMAN Splicing factor 3B subunit 4 OS=H... | 52 | 4.3 | 33.5 | 27 | 54 | GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:HGNC. | 249 | Q6CEW9 | 828 | MRD1_YARLI Multiple RNA-binding domain-contai... | 101 | 0.026 | 40.8 | 31 | 50 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 250 | Q9PTX2 | 164 | CIRBP_LITCT Cold-inducible RNA-binding protei... | 69 | 0.026 | 39.3 | 29 | 55 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0016477; P:cell migration; ISS:UniProtKB.::GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0042750; P:hibernation; IEP:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; ISS:UniProtKB.::GO:0009409; P:response to cold; ISS:UniProtKB. | 251 | P0CP46 | 673 | PABP_CRYNJ Polyadenylate-binding protein, cyt... | 69 | 0.026 | 40.8 | 33 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 252 | P0CP47 | 673 | PABP_CRYNB Polyadenylate-binding protein, cyt... | 69 | 0.026 | 40.8 | 33 | 52 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 253 | Q6AYL5 | 424 | SF3B4_RAT Splicing factor 3B subunit 4 OS=Rat... | 52 | 4.6 | 33.1 | 27 | 54 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 254 | Q8QZY9 | 424 | SF3B4_MOUSE Splicing factor 3B subunit 4 OS=M... | 52 | 4.6 | 33.1 | 27 | 54 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 255 | P57052 | 281 | RBM11_HUMAN Putative RNA-binding protein 11 O... | 70 | 0.027 | 40 | 39 | 57 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 256 | P25299 | 296 | RNA15_YEAST mRNA 3'-end-processing protein RN... | 59 | 0.028 | 40 | 25 | 63 | GO:0005849; C:mRNA cleavage factor complex; IPI:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0046982; F:protein heterodimerization activity; IPI:SGD. | | | | | | | | | | GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD. | 257 | Q8T6B9 | 637 | PUF68_DROME Poly(U)-binding-splicing factor h... | 98 | 0.029 | 40.4 | 24 | 44 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:FlyBase.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0007282; P:cystoblast division; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; IMP:FlyBase.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0001558; P:regulation of cell growth; IMP:FlyBase. | 258 | Q9Y388 | 322 | RBMX2_HUMAN RNA-binding motif protein, X-link... | 68 | 0.03 | 40 | 29 | 51 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 259 | B0BN49 | 328 | RBMX2_RAT RNA-binding motif protein, X-linked... | 57 | 0.03 | 40 | 33 | 56 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 260 | Q6FXP4 | 861 | MRD1_CANGA Multiple RNA-binding domain-contai... | 47 | 0.031 | 40.4 | 36 | 60 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 261 | P19682 | 276 | ROC3_NICSY 28 kDa ribonucleoprotein, chloropl... | 59 | 0.032 | 39.7 | 31 | 58 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 262 | Q8JGR6 | 155 | NCBP2_DANRE Nuclear cap-binding protein subun... | 76 | 0.032 | 38.5 | 25 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0031047; P:gene silencing by RNA; IEA:UniProtKB-KW.::GO:0006370; P:mRNA capping; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0046833; P:positive regulation of RNA export from nucleus; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; ISS:UniProtKB.::GO:0006408; P:snRNA export from nucleus; ISS:UniProtKB. | 263 | Q6PHZ5 | 887 | RB15B_MOUSE Putative RNA-binding protein 15B ... | 58 | 0.037 | 40.4 | 36 | 60 | GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 264 | P21187 | 634 | PABP_DROME Polyadenylate-binding protein OS=D... | 72 | 0.037 | 40 | 31 | 50 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005811; C:lipid particle; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:FlyBase.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0009953; P:dorsal/ventral pattern formation; IMP:FlyBase.::GO:0007140; P:male meiosis; IMP:FlyBase.::GO:0007112; P:male meiosis cytokinesis; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0048599; P:oocyte development; IMP:FlyBase.::GO:0045727; P:positive regulation of translation; IGI:FlyBase.::GO:0007289; P:spermatid nucleus differentiation; IMP:FlyBase.::GO:0007268; P:synaptic transmission; IMP:FlyBase. | 265 | Q7ZWE3 | 555 | LARP7_DANRE La-related protein 7 OS=Danio rer... | 66 | 0.038 | 40 | 33 | 52 | GO:0005634; C:nucleus; IEA:InterPro.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 266 | Q54BM2 | 565 | PAP1A_DICDI Polyadenylate-binding protein 1-A... | 132 | 1.2 | 35.4 | 24 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:dictyBase. | 267 | O64380 | 660 | PABP3_ARATH Polyadenylate-binding protein 3 O... | 137 | 0.039 | 40 | 26 | 47 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IGI:TAIR. | 268 | Q99383 | 534 | HRP1_YEAST Nuclear polyadenylated RNA-binding... | 57 | 0.04 | 40 | 26 | 63 | GO:0010494; C:cytoplasmic stress granule; IDA:SGD.::GO:0005849; C:mRNA cleavage factor complex; IPI:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0006379; P:mRNA cleavage; IDA:SGD.::GO:0006378; P:mRNA polyadenylation; IDA:SGD.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW. | 269 | Q8NDT2 | 890 | RB15B_HUMAN Putative RNA-binding protein 15B ... | 58 | 0.041 | 40 | 36 | 60 | GO:0005654; C:nucleoplasm; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IDA:UniProtKB.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 270 | Q09511 | 196 | RSP4_CAEEL Probable splicing factor, arginine... | 58 | 0.044 | 38.9 | 34 | 52 | GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB. | | | | | | | | | | GO:0010171; P:body morphogenesis; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0001703; P:gastrulation with mouth forming first; IMP:WormBase.::GO:0040011; P:locomotion; IMP:WormBase.::GO:0002009; P:morphogenesis of an epithelium; IMP:WormBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0042127; P:regulation of cell proliferation; IMP:WormBase.::GO:0040020; P:regulation of meiosis; IMP:WormBase. | 271 | Q9CQT2 | 265 | RBM7_MOUSE RNA-binding protein 7 OS=Mus muscu... | 63 | 0.044 | 39.3 | 41 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007126; P:meiosis; IEA:UniProtKB-KW. |