Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL041C
Length:
459
Number of sequences:
5887
Description:
YOL041C NOP12 SGDID:S000005401, Chr XV from 252646-251267, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein involved in pre-25S rRNA processing and biogenesis of large 60S ribosomal subunit; contains an RNA recognition motif (RRM); binds to Ebp2; similar to Nop13p and Nsr1p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1Q08208    459   NOP12_YEAST Nucleolar protein 12 OS=Saccharom...4590     929     100     100GO:0005730; C:nucleolus; IDA:SGD.::GO:0030684; C:preribosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
2Q75BJ7    426   NOP12_ASHGO Nucleolar protein 12 OS=Y-1056) (...4633e-151     444     54     68GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
3Q6CKV6    462   NOP12_KLULA Nucleolar protein 12 OS=1267 / NR...4732e-149     441     55     68GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
4Q6FUS6    396   NOP12_CANGA Nucleolar protein 12 OS=NRRL Y-65...3214e-120     363     60     74GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
5Q5AHI7    454   NOP12_CANAL Nucleolar protein 12 OS=Candida a...4649e-104     323     44     59GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
6Q6BTS9    462   NOP12_DEBHA Nucleolar protein 12 OS=0083 / IG...4929e-99     310     42     57GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
7Q6C2Q7    509   NOP12_YARLI Nucleolar protein 12 OS=lipolytic...3688e-84     273     45     58GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
8O13741    438   NOP12_SCHPO Nucleolar protein 12 OS=Schizosac...3527e-76     250     41     58GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; ISS:PomBase.
9Q5BDC8    520   NOP12_EMENI Nucleolar protein 12 OS=194 / M13...4792e-52     189     33     46GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
10Q4WCH5    538   NOP12_ASPFU Nucleolar protein 12 OS=A1100) (A...3569e-48     177     36     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
11Q4IQW0    559   NOP12_GIBZE Nucleolar protein 12 OS=(Wheat he...632.1     34.7     35     56GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
12Q7S2L7    594   NOP12_NEUCR Nucleolar protein 12 OS=1257 / FG...4003e-45     171     32     47GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
13P42696    430   RBM34_HUMAN RNA-binding protein 34 OS=Homo sa...2549e-31     126     35     50GO:0005730; C:nucleolus; IDA:HPA.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
14Q5M9F1    428   RBM34_RAT RNA-binding protein 34 OS=Rattus no...2513e-30     125     35     49GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
15Q8C5L7    375   RBM34_MOUSE RNA-binding protein 34 OS=Mus mus...2364e-30     124     35     52GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
16O14327    166   PAB2_SCHPO Polyadenylate-binding protein 2 OS...720.0000000002     63.2     42     58GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:PomBase.::GO:0005515; F:protein binding; IPI:PomBase.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:PomBase.
17Q6NVP7    296   PABP2_XENTR Polyadenylate-binding protein 2 O...630.0000000003     64.3     46     62GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
18Q7ZXB8    295   PAB2B_XENLA Polyadenylate-binding protein 2-B...630.0000000004     64.3     46     62GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
19Q9DDY9    296   PAB2A_XENLA Polyadenylate-binding protein 2-A...630.0000000008     63.2     46     62GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
20Q28165    306   PABP2_BOVIN Polyadenylate-binding protein 2 O...700.000000002     62     40     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
21Q8CCS6    302   PABP2_MOUSE Polyadenylate-binding protein 2 O...700.000000002     62     40     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:MGI.
GO:0006378; P:mRNA polyadenylation; TAS:MGI.
22Q86U42    306   PABP2_HUMAN Polyadenylate-binding protein 2 O...700.000000002     62     40     60GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0046778; P:modification by virus of host mRNA processing; TAS:Reactome.::GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006936; P:muscle contraction; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.::GO:0019058; P:viral infectious cycle; TAS:Reactome.
23Q6TY21    218   EPA2B_XENLA Embryonic polyadenylate-binding p...640.000000005     59.7     38     63GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
24P41891    500   GAR2_SCHPO Protein gar2 OS=Schizosaccharomyce...480.029     40.4     35     56GO:0005730; C:nucleolus; IDA:PomBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:PomBase.
GO:0007000; P:nucleolus organization; IMP:PomBase.::GO:0006364; P:rRNA processing; IMP:PomBase.
25Q804A5    218   EPA2A_XENLA Embryonic polyadenylate-binding p...640.00000001     58.9     38     63GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
26Q7KNF2    224   PABP2_DROME Polyadenylate-binding protein 2 O...1120.00000002     58.2     32     48GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:FlyBase.
27Q09295    191   YQO4_CAEEL Putative RNA-binding protein EEED8...890.00000002     57.4     34     54
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
28Q28ZX3    225   PABP2_DROPS Polyadenylate-binding protein 2 O...700.00000003     57.4     37     56GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0042802; F:identical protein binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
29Q5XFR0    273   EPAB2_MOUSE Embryonic polyadenylate-binding p...690.00000004     57.8     38     59GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.
30Q09301    197   YQOC_CAEEL Putative RNA-binding protein EEED8...690.00000005     56.6     38     59
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
31P53883    403   NOP13_YEAST Nucleolar protein 13 OS=Saccharom...1140.0000002     57     32     51GO:0005730; C:nucleolus; IDA:SGD.::GO:0030684; C:preribosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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