Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YOL005C
Length:
120
Number of sequences:
5887
Description:
YOL005C RPB11 SGDID:S000005365, Chr XV from 316175-315813, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P38902    120   RPB11_YEAST DNA-directed RNA polymerase II su...1204e-83     245     100     100GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:SGD.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0006369; P:termination of RNA polymerase II transcription; IMP:SGD.
2P52435    117   RPB11_HUMAN DNA-directed RNA polymerase II su...1052e-32     115     52     69GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; TAS:ProtInc.::GO:0030275; F:LRR domain binding; IPI:UniProtKB.
GO:0006370; P:mRNA capping; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0050434; P:positive regulation of viral transcription; TAS:Reactome.::GO:0006468; P:protein phosphorylation; IDA:GOC.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; TAS:Reactome.::GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.::GO:0006283; P:transcription-coupled nucleotide-excision repair; TAS:Reactome.::GO:0016032; P:viral reproduction; TAS:Reactome.
3Q32P79    117   RPB11_BOVIN DNA-directed RNA polymerase II su...1052e-32     115     52     69GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:UniProtKB.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006468; P:protein phosphorylation; ISS:GOC.::GO:0006366; P:transcription from RNA polymerase II promoter; ISS:UniProtKB.
4O08740    117   RPB11_MOUSE DNA-directed RNA polymerase II su...1053e-32     115     52     69GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
5Q9H1A7    115   RPB1C_HUMAN DNA-directed RNA polymerase II su...1072e-31     113     52     68GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
6Q9GZM3    115   RPB1B_HUMAN DNA-directed RNA polymerase II su...1073e-31     113     52     68GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
7P87123    123   RPB11_SCHPO DNA-directed RNA polymerase II su...1174e-31     112     46     64GO:0005829; C:cytosol; IDA:PomBase.::GO:0005665; C:DNA-directed RNA polymerase II, core complex; IDA:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; IC:PomBase.
8Q7PVQ9    117   RPB11_ANOGA DNA-directed RNA polymerase II su...1051e-29     108     51     64GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
9Q9VJE4    117   RPB11_DROME DNA-directed RNA polymerase II su...1064e-29     107     51     64GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:FlyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:FlyBase.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:FlyBase.
10Q38859    116   RPB11_ARATH DNA-directed RNA polymerase II su...1086e-26     99.4     44     59GO:0005665; C:DNA-directed RNA polymerase II, core complex; IPI:TAIR.::GO:0000418; C:DNA-directed RNA polymerase IV complex; IPI:TAIR.::GO:0000419; C:DNA-directed RNA polymerase V complex; IPI:TAIR.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
11Q86JJ5    120   RPB11_DICDI DNA-directed RNA polymerase II su...1052e-25     97.8     42     65GO:0005665; C:DNA-directed RNA polymerase II, core complex; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:dictyBase.
12Q60SM4    122   RPB11_CAEBR Probable DNA-directed RNA polymer...1176e-25     97.1     44     60GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
13Q9XVH6    122   RPB11_CAEEL Probable DNA-directed RNA polymer...1172e-24     95.5     44     58GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0040035; P:hermaphrodite genitalia development; IMP:WormBase.::GO:0040027; P:negative regulation of vulval development; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0048477; P:oogenesis; IMP:WormBase.::GO:0040010; P:positive regulation of growth rate; IMP:WormBase.::GO:0006898; P:receptor-mediated endocytosis; IMP:WormBase.
14Q8IER7    126   RPB11_PLAF7 Probable DNA-directed RNA polymer...1040.0000000000002     66.6     36     56GO:0016591; C:DNA-directed RNA polymerase II, holoenzyme; ISS:GeneDB_Pfalciparum.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006366; P:transcription from RNA polymerase II promoter; ISS:GeneDB_Pfalciparum.
15Q4XS21    126   RPB11_PLACH Probable DNA-directed RNA polymer...1040.0000000000002     66.2     36     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
16Q4YZZ7    126   RPB11_PLABA Probable DNA-directed RNA polymer...1040.0000000000007     65.1     35     55GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
17Q6DRI4    112   RPAC2_DANRE DNA-directed RNA polymerases I an...950.000000002     55.5     28     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
18Q09177    125   RPAC2_SCHPO DNA-directed RNA polymerases I an...770.000000006     53.9     32     51GO:0005736; C:DNA-directed RNA polymerase I complex; IGI:PomBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; IGI:PomBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006360; P:transcription from RNA polymerase I promoter; IGI:PomBase.::GO:0006383; P:transcription from RNA polymerase III promoter; IGI:PomBase.
19Q5XK67    114   RPAC2_XENLA DNA-directed RNA polymerases I an...910.00000009     50.4     30     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
20O27372    85   RPOL_METTH DNA-directed RNA polymerase subuni...790.0000001     49.7     34     54
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
21Q54ES6    116   RPC19_DICDI DNA-directed RNA polymerases I an...680.0000001     50.1     35     53GO:0005736; C:DNA-directed RNA polymerase I complex; ISS:dictyBase.::GO:0005666; C:DNA-directed RNA polymerase III complex; ISS:dictyBase.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; ISS:dictyBase.
GO:0006360; P:transcription from RNA polymerase I promoter; ISS:dictyBase.::GO:0006383; P:transcription from RNA polymerase III promoter; ISS:dictyBase.
22P97304    133   RPAC2_MOUSE DNA-directed RNA polymerases I an...980.0000003     49.3     29     45GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
23Q9Y2S0    133   RPAC2_HUMAN DNA-directed RNA polymerases I an...1000.0000003     48.9     31     47GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006363; P:termination of RNA polymerase I transcription; TAS:Reactome.::GO:0006386; P:termination of RNA polymerase III transcription; TAS:Reactome.::GO:0006362; P:transcription elongation from RNA polymerase I promoter; TAS:Reactome.::GO:0006385; P:transcription elongation from RNA polymerase III promoter; TAS:Reactome.::GO:0006361; P:transcription initiation from RNA polymerase I promoter; TAS:Reactome.
24Q980K0    92   RPOL_SULSO DNA-directed RNA polymerase subuni...660.0000004     48.1     41     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.::GO:0046983; F:protein dimerization activity; IEA:InterPro.
25P34476    144   RPAC2_CAEEL Probable DNA-directed RNA polymer...910.0000004     48.5     29     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
26C3N7I8    92   RPOL_SULIY DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
27C3NFY8    92   RPOL_SULIN DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
28C3MXM0    92   RPOL_SULIM DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
29C3MRD1    92   RPOL_SULIL DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
30C4KIP6    92   RPOL_SULIK DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
31C3MZG6    92   RPOL_SULIA DNA-directed RNA polymerase subuni...660.0000006     47.8     39     52
GO:0003677; F:DNA binding; IEA:InterPro.::GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
records
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