Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL288W
Length:
373
Number of sequences:
5887
Description:
YNL288W CAF40 SGDID:S000005232, Chr XIV from 90303-91424, Genome Release 64-1-1, Verified ORF, "Evolutionarily conserved subunit of the CCR4-NOT complex involved in controlling mRNA initiation, elongation and degradation; binds Cdc39p"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53829    373   CAF40_YEAST Protein CAF40 OS=Saccharomyces ce...3730     765     100     100GO:0030015; C:CCR4-NOT core complex; IPI:SGD.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.
GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IDA:SGD.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
2Q92368    283   RCD1_SCHPO Cell differentiation protein rcd1 ...2751e-122     362     66     79GO:0030014; C:CCR4-NOT complex; ISS:PomBase.::GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0003723; F:RNA binding; TAS:PomBase.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0006402; P:mRNA catabolic process; IC:PomBase.::GO:0010515; P:negative regulation of induction of conjugation with cellular fusion; IMP:PomBase.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IMP:PomBase.::GO:0007548; P:sex differentiation; IEA:UniProtKB-KW.::GO:0006354; P:transcription elongation, DNA-dependent; IC:PomBase.
3Q6P819    299   RCD1_XENTR Cell differentiation protein RCD1 ...2759e-113     338     61     73GO:0000932; C:cytoplasmic mRNA processing body; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
4Q6IP65    299   RCD1_XENLA Cell differentiation protein RCD1 ...2759e-113     338     61     73GO:0000932; C:cytoplasmic mRNA processing body; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
5Q5PQL2    299   RCD1_RAT Cell differentiation protein RCD1 ho...2741e-112     337     61     74GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
6Q9JKY0    299   RCD1_MOUSE Cell differentiation protein RCD1 ...2741e-112     337     61     74GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0019221; P:cytokine-mediated signaling pathway; IDA:MGI.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
7Q4R347    299   RCD1_MACFA Cell differentiation protein RCD1 ...2741e-112     337     61     74GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
8A7MB47    299   RCD1_BOVIN Cell differentiation protein RCD1 ...2741e-112     337     61     74GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
9Q5R6Z6    299   RCD1_PONAB Cell differentiation protein RCD1 ...2703e-112     336     61     74GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
10Q92600    299   RCD1_HUMAN Cell differentiation protein RCD1 ...2703e-112     336     61     74GO:0000932; C:cytoplasmic mRNA processing body; ISS:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0007548; P:sex differentiation; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
11Q6NWL4    298   RCD1_DANRE Cell differentiation protein RCD1 ...2702e-109     329     61     73GO:0000932; C:cytoplasmic mRNA processing body; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005488; F:binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
12Q8CHI5    1293   PER1_RAT Period circadian protein homolog 1 O...570.6     36.2     40     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:RGD.::GO:0004871; F:signal transducer activity; IEA:InterPro.
GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13O35973    1291   PER1_MOUSE Period circadian protein homolog 1...560.7     35.8     41     50GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0000988; F:protein binding transcription factor activity; IDA:BHF-UCL.::GO:0004871; F:signal transducer activity; IEA:InterPro.
GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.::GO:0009416; P:response to light stimulus; IEP:BHF-UCL.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
14Q73LW4    382   OBG_TREDE GTPase obg OS=Treponema denticola (...1151.1     34.7     28     45GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0003924; F:GTPase activity; IEA:InterPro.::GO:0000287; F:magnesium ion binding; IEA:InterPro.
15Q8ILR9    4662   YPF17_PLAF7 Protein PF14_0175 OS=Plasmodium f...784.1     33.5     37     49GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
16P02457    1453   CO1A1_CHICK Collagen alpha-1(I) chain OS=Gall...885.2     33.1     31     36GO:0005581; C:collagen; IEA:UniProtKB-KW.
GO:0005201; F:extracellular matrix structural constituent; IEA:InterPro.
17P28178    479   PK2_DICDI Protein kinase 2 OS=Dictyostelium d...2627     32.3     22     41GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
GO:0006935; P:chemotaxis; IEA:UniProtKB-KW.
18Q9UGU0    1960   TCF20_HUMAN Transcription factor 20 OS=Homo s...748     32.3     30     45GO:0005634; C:nucleus; NAS:UniProtKB.
GO:0003677; F:DNA binding; NAS:UniProtKB.::GO:0003713; F:transcription coactivator activity; NAS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; NAS:UniProtKB.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
19Q8K3T3    1285   PER1_SPAJD Period circadian protein homolog 1...578.5     32.3     39     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0004871; F:signal transducer activity; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
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