rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
61 | Q6IP09 | 633 | PABPB_XENLA Polyadenylate-binding protein 1-B... | 103 | 2.5 | 33.5 | 28 | 43 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005844; C:polysome; ISS:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 62 | Q13310 | 644 | PABP4_HUMAN Polyadenylate-binding protein 4 O... | 99 | 2.7 | 33.1 | 30 | 45 | GO:0005737; C:cytoplasm; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:MGI.::GO:0008266; F:poly(U) RNA binding; IDA:MGI.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:InterPro. | | | | | | | | | | GO:0007596; P:blood coagulation; TAS:ProtInc.::GO:0006401; P:RNA catabolic process; TAS:ProtInc.::GO:0006396; P:RNA processing; TAS:ProtInc.::GO:0006412; P:translation; TAS:ProtInc. | 63 | Q03878 | 157 | GRP1_DAUCA Glycine-rich RNA-binding protein O... | 84 | 2.9 | 32.3 | 30 | 48 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 64 | B8M853 | 985 | M28P1_TALSN Probable zinc metalloprotease TST... | 91 | 2.9 | 33.1 | 26 | 47 | GO:0016021; C:integral to membrane; IEA:UniProtKB-KW. | | | | | | | | | | GO:0008237; F:metallopeptidase activity; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006508; P:proteolysis; IEA:UniProtKB-KW. | 65 | Q8T6B9 | 637 | PUF68_DROME Poly(U)-binding-splicing factor h... | 85 | 3 | 33.1 | 26 | 46 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; ISS:FlyBase.::GO:0005515; F:protein binding; IPI:FlyBase. | | | | | | | | | | GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0007282; P:cystoblast division; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; IMP:FlyBase.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0048477; P:oogenesis; IEA:UniProtKB-KW.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.::GO:0001558; P:regulation of cell growth; IMP:FlyBase. | 66 | Q2GSX8 | 783 | PABP_CHAGB Polyadenylate-binding protein, cyt... | 85 | 3.1 | 33.1 | 26 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 67 | Q43349 | 342 | ROC2_ARATH 29 kDa ribonucleoprotein, chloropl... | 52 | 3.1 | 32.7 | 35 | 50 | GO:0009570; C:chloroplast stroma; IDA:TAIR.::GO:0009534; C:chloroplast thylakoid; IDA:TAIR.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:TAIR. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 68 | Q1ZXC2 | 814 | PAP1B_DICDI Polyadenylate-binding protein 1-B... | 66 | 3.4 | 33.1 | 33 | 50 | GO:0005737; C:cytoplasm; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:dictyBase. | 69 | O42923 | 490 | CIP1_SCHPO RNA-binding post-transcriptional r... | 82 | 3.6 | 32.7 | 26 | 46 | GO:0005829; C:cytosol; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0034599; P:cellular response to oxidative stress; IGI:PomBase.::GO:2000815; P:regulation of mRNA stability involved in response to oxidative stress; IMP:PomBase. | 70 | P95979 | 764 | DPOL3_SULSO DNA polymerase 3 OS=P2). GN=dpo3 ... | 128 | 3.6 | 32.7 | 28 | 43 | | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0006260; P:DNA replication; IEA:UniProtKB-KW. | 71 | Q05AT9 | 272 | U1SBP_XENLA U11/U12 small nuclear ribonucleop... | 83 | 3.7 | 32.3 | 28 | 54 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 72 | Q8IXT5 | 1001 | RB12B_HUMAN RNA-binding protein 12B OS=Homo s... | 134 | 3.8 | 32.7 | 26 | 43 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 73 | Q9UKA9 | 531 | PTBP2_HUMAN Polypyrimidine tract-binding prot... | 169 | 4 | 32.7 | 25 | 39 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0033119; P:negative regulation of RNA splicing; IDA:UniProtKB. | 74 | A4FV72 | 301 | PPIE_BOVIN Peptidyl-prolyl cis-trans isomeras... | 61 | 4.1 | 32.3 | 36 | 54 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 75 | Q5R723 | 301 | PPIE_PONAB Peptidyl-prolyl cis-trans isomeras... | 61 | 4.2 | 32.3 | 36 | 54 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 76 | P38656 | 415 | LA_RAT Lupus La protein homolog OS=Rattus nor... | 21 | 4.3 | 32.3 | 62 | 67 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0008033; P:tRNA processing; IMP:RGD. | 77 | Q9UNP9 | 301 | PPIE_HUMAN Peptidyl-prolyl cis-trans isomeras... | 61 | 4.3 | 32.3 | 36 | 54 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB. | | | | | | | | | | GO:0016018; F:cyclosporin A binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; TAS:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IMP:UniProtKB. | 78 | Q5R8F7 | 636 | PABP1_PONAB Polyadenylate-binding protein 1 O... | 103 | 4.5 | 32.7 | 28 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 79 | P11940 | 636 | PABP1_HUMAN Polyadenylate-binding protein 1 O... | 103 | 4.5 | 32.7 | 28 | 44 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:UniProtKB.::GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.::GO:0008494; F:translation activator activity; TAS:UniProtKB. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; TAS:UniProtKB.::GO:0048255; P:mRNA stabilization; TAS:UniProtKB.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.::GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.::GO:0006413; P:translational initiation; TAS:Reactome. | 80 | P61286 | 636 | PABP1_BOVIN Polyadenylate-binding protein 1 O... | 103 | 4.5 | 32.7 | 28 | 44 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:AgBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; ISS:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 81 | P32067 | 415 | LA_MOUSE Lupus La protein homolog OS=Mus musc... | 21 | 4.5 | 32.3 | 62 | 67 | GO:0005634; C:nucleus; IDA:MGI.::GO:0030529; C:ribonucleoprotein complex; IEA:InterPro. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:MGI. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 82 | Q9QZH3 | 301 | PPIE_MOUSE Peptidyl-prolyl cis-trans isomeras... | 61 | 4.7 | 32.3 | 36 | 54 | GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006457; P:protein folding; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 83 | Q66H20 | 531 | PTBP2_RAT Polypyrimidine tract-binding protei... | 169 | 4.7 | 32.3 | 25 | 39 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | | 84 | Q91Z31 | 531 | PTBP2_MOUSE Polypyrimidine tract-binding prot... | 169 | 4.7 | 32.3 | 25 | 39 | GO:0005681; C:spliceosomal complex; IDA:MGI. | | | | | | | | | | GO:0003729; F:mRNA binding; IDA:MGI.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0006376; P:mRNA splice site selection; IDA:MGI. | 85 | Q04047 | 700 | NONA_DROME Protein no-on-transient A OS=Droso... | 86 | 4.7 | 32.3 | 26 | 45 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase. | | | | | | | | | | GO:0003729; F:mRNA binding; TAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0045433; P:male courtship behavior, veined wing generated song production; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0042331; P:phototaxis; NAS:FlyBase.::GO:0007632; P:visual behavior; NAS:FlyBase.::GO:0007601; P:visual perception; IMP:FlyBase. | 86 | Q5RCY1 | 419 | UHMK1_PONAB Serine/threonine-protein kinase K... | 53 | 5.3 | 32.3 | 34 | 57 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0005524; F:ATP binding; IEA:UniProtKB-KW.::GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 87 | Q8TAS1 | 419 | UHMK1_HUMAN Serine/threonine-protein kinase K... | 53 | 5.3 | 32.3 | 34 | 57 | GO:0030424; C:axon; ISS:BHF-UCL.::GO:0032839; C:dendrite cytoplasm; ISS:BHF-UCL.::GO:0071598; C:neuronal ribonucleoprotein granule; ISS:BHF-UCL.::GO:0005634; C:nucleus; IDA:HGNC. | | | | | | | | | | GO:0005524; F:ATP binding; IC:HGNC.::GO:0005515; F:protein binding; IPI:HGNC.::GO:0004674; F:protein serine/threonine kinase activity; IDA:HGNC.::GO:0043021; F:ribonucleoprotein complex binding; ISS:BHF-UCL.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0007050; P:cell cycle arrest; IMP:HGNC.::GO:0031175; P:neuron projection development; ISS:BHF-UCL.::GO:0018105; P:peptidyl-serine phosphorylation; ISS:UniProtKB.::GO:0045948; P:positive regulation of translational initiation; ISS:BHF-UCL.::GO:0046777; P:protein autophosphorylation; IDA:HGNC.::GO:0046825; P:regulation of protein export from nucleus; IDA:HGNC. | 88 | Q0CR95 | 753 | PABP_ASPTN Polyadenylate-binding protein, cyt... | 85 | 5.4 | 32.3 | 27 | 49 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 89 | Q98SP8 | 629 | EPABA_XENLA Embryonic polyadenylate-binding p... | 99 | 5.5 | 32.3 | 29 | 43 | GO:0005737; C:cytoplasm; IDA:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; IPI:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.::GO:0043621; F:protein self-association; IPI:UniProtKB. | | | | | | | | | | GO:0043009; P:chordate embryonic development; IEP:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; IDA:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; IDA:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 90 | Q9DED4 | 166 | CIRBB_XENLA Cold-inducible RNA-binding protei... | 82 | 5.6 | 31.6 | 28 | 46 | GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0019899; F:enzyme binding; IPI:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0016477; P:cell migration; IMP:UniProtKB.::GO:0007369; P:gastrulation; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; IMP:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; IMP:UniProtKB.::GO:0022008; P:neurogenesis; IMP:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; ISS:UniProtKB.::GO:0009409; P:response to cold; ISS:UniProtKB. | 91 | Q8LPQ9 | 901 | FPA_ARATH Flowering time control protein FPA ... | 260 | 5.7 | 32.3 | 23 | 42 | GO:0000785; C:chromatin; IDA:TAIR.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0031048; P:chromatin silencing by small RNA; IMP:TAIR.::GO:0009790; P:embryo development; IGI:TAIR.::GO:0009553; P:embryo sac development; IGI:TAIR.::GO:0009908; P:flower development; IEA:UniProtKB-KW.::GO:0006378; P:mRNA polyadenylation; IDA:UniProtKB.::GO:0009911; P:positive regulation of flower development; IMP:TAIR.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0010228; P:vegetative to reproductive phase transition of meristem; IMP:TAIR. |