Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL224C
Length:
767
Number of sequences:
5887
Description:
YNL224C SQS1 SGDID:S000005168, Chr XIV from 227099-224796, Genome Release 64-1-1, reverse complement, Verified ORF, "Stimulates the ATPase and helicase activities of Prp43p; acts with Prp43p to stimulate 18s rRNA maturation by Nob1p; overexpression antagonizes the suppression of splicing defects by spp382 mutants; component of pre-ribosomal particles"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53866    767   SQS1_YEAST Protein SQS1 OS=Saccharomyces cere...7670     1578     100     100GO:0030686; C:90S preribosome; IDA:SGD.::GO:0005737; C:cytoplasm; IDA:SGD.::GO:0005634; C:nucleus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.::GO:0030688; C:preribosome, small subunit precursor; IDA:SGD.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0030490; P:maturation of SSU-rRNA; IGI:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IGI:SGD.::GO:0032781; P:positive regulation of ATPase activity; IDA:SGD.::GO:0051096; P:positive regulation of helicase activity; IDA:SGD.
2A6ZRL6    767   SQS1_YEAS7 Protein SQS1 OS=Saccharomyces cere...7670     1576     99     99GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
3Q6FP19    808   SQS1_CANGA Protein SQS1 OS=NRRL Y-65) (Yeast)...7600     586     47     64GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4A7TQN2    767   SQS1_VANPO Protein SQS1 OS=(Kluyveromyces pol...7520     566     46     63GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5Q6CQ59    740   SQS1_KLULA Protein SQS1 OS=1267 / NRRL Y-1140...7923e-154     474     39     55GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q75E62    679   SQS1_ASHGO Protein SQS1 OS=Y-1056) (Yeast) (E...7352e-123     392     36     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7A5DEF8    749   SQS1_PICGU Protein SQS1 OS=1539 / NBRC 10279 ...7035e-89     302     33     52GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8Q6BYP9    808   SQS1_DEBHA Protein SQS1 OS=0083 / IGC 2968) (...870.018     42.4     34     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9Q59UG4    705   SQS1_CANAL Protein SQS1 OS=Candida albicans (...4061e-55     207     37     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
10A5DSB5    792   SQS1_LODEL Protein SQS1 OS=NBRC 1676 / NRRL Y...4514e-52     197     33     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
11Q875B6    718   SQS1_PODAS Protein SQS1 OS=Podospora anserina...2352e-31     134     36     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
12Q6C233    812   SQS1_YARLI Protein SQS1 OS=lipolytica). GN=SQ...3561e-21     104     28     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
13O74363    695   YND2_SCHPO G-patch and R3H domain-containing ...1750.000000000000001     84.7     30     51GO:0005829; C:cytosol; IDA:PomBase.::GO:0030688; C:preribosome, small subunit precursor; ISS:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0030490; P:maturation of SSU-rRNA; ISS:PomBase.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
14O94585    187   YQ7D_SCHPO Meiotically up-regulated protein C...560.000002     52.4     43     70GO:0005634; C:nucleus; IDA:PomBase.::GO:0005816; C:spindle pole body; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0007126; P:meiosis; IMP:PomBase.
15Q9NW75    528   GPTC2_HUMAN G patch domain-containing protein...530.00002     51.6     53     60
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; IDA:UniProtKB.
16Q6DF57    261   CCD75_XENTR Coiled-coil domain-containing pro...490.00005     49.3     51     69
GO:0003676; F:nucleic acid binding; IEA:InterPro.
17Q7TQC7    527   GPTC2_MOUSE G patch domain-containing protein...530.00005     50.1     49     62
GO:0003676; F:nucleic acid binding; IEA:InterPro.
GO:0010923; P:negative regulation of phosphatase activity; ISS:UniProtKB.
18Q6DDU9    749   RBM5B_XENLA RNA-binding protein 5-B OS=Xenopu...450.0002     48.5     47     71GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
19A4IGK4    838   RBM5_XENTR RNA-binding protein 5 OS=Xenopus t...450.0002     48.5     47     71GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
20A0JMV4    833   RBM5A_XENLA RNA-binding protein 5-A OS=Xenopu...450.0002     48.5     47     71GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
21Q99KG3    930   RBM10_MOUSE RNA-binding protein 10 OS=Mus mus...450.0004     47.8     49     69GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
22P98175    930   RBM10_HUMAN RNA-binding protein 10 OS=Homo sa...450.0004     47.8     49     69GO:0016585; C:chromatin remodeling complex; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; NAS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
23P70501    852   RBM10_RAT RNA-binding protein 10 OS=Rattus no...450.0004     47.4     49     69GO:0016585; C:chromatin remodeling complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
24Q3UFS4    262   CCD75_MOUSE Coiled-coil domain-containing pro...950.001     45.4     38     56
GO:0003676; F:nucleic acid binding; IEA:InterPro.
25Q8N954    259   CCD75_HUMAN Coiled-coil domain-containing pro...500.001     44.7     48     64
GO:0003676; F:nucleic acid binding; IEA:InterPro.
26Q2KI19    260   CCD75_BOVIN Coiled-coil domain-containing pro...470.002     44.3     47     68
GO:0003676; F:nucleic acid binding; IEA:InterPro.
27Q09806    301   YAB4_SCHPO Uncharacterized protein C2G11.04 O...460.003     44.3     41     65GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0003676; F:nucleic acid binding; IEA:InterPro.
28P42698    387   DR111_ARATH DNA-damage-repair/toleration prot...600.003     44.3     35     55GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:TAIR.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006281; P:DNA repair; IGI:TAIR.
29Q9CZX5    332   PINX1_MOUSE PIN2/TERF1-interacting telomerase...400.004     43.9     50     68GO:0000781; C:chromosome, telomeric region; IDA:MGI.::GO:0000777; C:condensed chromosome kinetochore; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:MGI.
GO:0005515; F:protein binding; IPI:MGI.
GO:0007004; P:telomere maintenance via telomerase; IDA:MGI.
30Q1RMU5    815   RBM5_BOVIN RNA-binding protein 5 OS=Bos tauru...450.004     44.3     42     69GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0043065; P:positive regulation of apoptotic process; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000245; P:spliceosomal complex assembly; ISS:UniProtKB.
31Q94C11    443   SUGP1_ARATH SURP and G-patch domain-containin...500.004     43.9     42     66GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
records
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