Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL210W
Length:
270
Number of sequences:
5887
Description:
YNL210W MER1 SGDID:S000005154, Chr XIV from 250931-251743, Genome Release 64-1-1, Verified ORF, "Protein with RNA-binding motifs required for meiosis-specific mRNA splicing; required for chromosome pairing and meiotic recombination; Mer1p regulon embraces four essential meiotic pre-mRNAs: REC107, HFM1, AMA1 and SPO22"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P16523    270   MER1_YEAST Meiotic recombination 1 protein OS...2700     548     100     100GO:0005634; C:nucleus; IDA:SGD.
GO:0003729; F:mRNA binding; IDA:SGD.
GO:0048026; P:positive regulation of nuclear mRNA splicing, via spliceosome; IMP:SGD.::GO:0007131; P:reciprocal meiotic recombination; IMP:SGD.
2P81021    1270   VIGLN_CHICK Vigilin OS=Gallus gallus (Chicken...790.06     38.5     27     54GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
3Q5R439    1268   VIGLN_PONAB Vigilin OS=Pongo abelii (Sumatran...730.13     37.4     23     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0034364; C:high-density lipoprotein particle; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008203; P:cholesterol metabolic process; IEA:UniProtKB-KW.::GO:0006869; P:lipid transport; IEA:UniProtKB-KW.
4Q9Z1A6    1268   VIGLN_RAT Vigilin OS=Rattus norvegicus (Rat)....730.14     37.4     23     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0034364; C:high-density lipoprotein particle; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008203; P:cholesterol metabolic process; IEA:UniProtKB-KW.::GO:0006869; P:lipid transport; IEA:UniProtKB-KW.
5Q00341    1268   VIGLN_HUMAN Vigilin OS=Homo sapiens (Human). ...730.14     37.4     23     56GO:0005737; C:cytoplasm; IDA:HPA.::GO:0034364; C:high-density lipoprotein particle; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; TAS:ProtInc.
GO:0008289; F:lipid binding; TAS:ProtInc.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008203; P:cholesterol metabolic process; TAS:ProtInc.::GO:0006869; P:lipid transport; IEA:UniProtKB-KW.
6Q8VDJ3    1268   VIGLN_MOUSE Vigilin OS=Mus musculus (Mouse). ...730.15     37.4     23     56GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0034364; C:high-density lipoprotein particle; IEA:UniProtKB-KW.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008203; P:cholesterol metabolic process; IEA:UniProtKB-KW.::GO:0006869; P:lipid transport; IEA:UniProtKB-KW.
7P57721    371   PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Hom...840.37     35.4     29     49GO:0005829; C:cytosol; IDA:UniProtKB.::GO:0005739; C:mitochondrion; IDA:HPA.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; NAS:UniProtKB.
GO:0016071; P:mRNA metabolic process; NAS:UniProtKB.
8O19048    356   PCBP1_RABIT Poly(rC)-binding protein 1 OS=Ory...940.38     35.4     29     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
9P60335    356   PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus...940.38     35.4     29     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:MGI.::GO:0008494; F:translation activator activity; TAS:MGI.
GO:0006397; P:mRNA processing; TAS:MGI.
10Q15365    356   PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Hom...940.38     35.4     29     47GO:0005737; C:cytoplasm; NAS:UniProtKB.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IDA:UniProtKB.::GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.
11Q5E9A3    356   PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos...940.38     35.4     29     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; ISS:AgBase.::GO:0003697; F:single-stranded DNA binding; ISS:AgBase.
12Q32PX7    639   FUBP1_RAT Far upstream element-binding protei...660.4     35.8     33     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
13P57722    371   PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus...770.44     35.4     29     51GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
14Q91WJ8    651   FUBP1_MOUSE Far upstream element-binding prot...660.62     35     33     53GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:InterPro.
GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
15Q96AE4    644   FUBP1_HUMAN Far upstream element-binding prot...660.62     35     33     53GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0003723; F:RNA binding; IEA:InterPro.::GO:0003700; F:sequence-specific DNA binding transcription factor activity; TAS:ProtInc.::GO:0003697; F:single-stranded DNA binding; TAS:ProtInc.
GO:0010628; P:positive regulation of gene expression; IDA:UniProtKB.::GO:0006366; P:transcription from RNA polymerase II promoter; TAS:ProtInc.
16P44518    462   SRP54_HAEIN Signal recognition particle prote...500.73     34.7     36     56GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
17P57724    403   PCBP4_MOUSE Poly(rC)-binding protein 4 OS=Mus...830.91     34.3     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
18P57723    403   PCBP4_HUMAN Poly(rC)-binding protein 4 OS=Hom...740.91     34.3     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; NAS:UniProtKB.
19Q0VCU0    403   PCBP4_BOVIN Poly(rC)-binding protein 4 OS=Bos...740.93     34.3     31     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
20Q5R5H8    464   HNRPK_PONAB Heterogeneous nuclear ribonucleop...371.1     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
21Q4R4M6    464   HNRPK_MACFA Heterogeneous nuclear ribonucleop...371.1     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
22P61980    463   HNRPK_RAT Heterogeneous nuclear ribonucleopro...371.2     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; IDA:RGD.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
23P61979    463   HNRPK_MOUSE Heterogeneous nuclear ribonucleop...371.2     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
24P61978    463   HNRPK_HUMAN Heterogeneous nuclear ribonucleop...371.2     34.3     43     65GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; TAS:ProtInc.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0000790; C:nuclear chromatin; IDA:BHF-UCL.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc.::GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; IMP:BHF-UCL.::GO:0001077; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription; IMP:BHF-UCL.::GO:0003697; F:single-stranded DNA binding; TAS:BHF-UCL.
GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.::GO:0045716; P:positive regulation of low-density lipoprotein particle receptor biosynthetic process; IMP:BHF-UCL.::GO:0048260; P:positive regulation of receptor-mediated endocytosis; IMP:BHF-UCL.::GO:0072369; P:regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter; IMP:BHF-UCL.::GO:0010988; P:regulation of low-density lipoprotein particle clearance; IMP:BHF-UCL.::GO:0007165; P:signal transduction; TAS:ProtInc.
25Q3T0D0    464   HNRPK_BOVIN Heterogeneous nuclear ribonucleop...371.2     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
26Q5ZIQ3    427   HNRPK_CHICK Heterogeneous nuclear ribonucleop...371.2     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
27O19049    463   HNRPK_RABIT Heterogeneous nuclear ribonucleop...371.2     34.3     43     65GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
28Q2GGA4    796   PNP_EHRCR Polyribonucleotide nucleotidyltrans...581.5     33.9     34     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000175; F:3'-5'-exoribonuclease activity; IEA:InterPro.::GO:0004654; F:polyribonucleotide nucleotidyltransferase activity; IEA:EC.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; IEA:InterPro.::GO:0006396; P:RNA processing; IEA:InterPro.
29P0AGD7    453   SRP54_ECOLI Signal recognition particle prote...591.6     33.9     34     53GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IDA:EcoliWiki.::GO:0003924; F:GTPase activity; IMP:EcoCyc.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
30P0AGD8    453   SRP54_ECOL6 Signal recognition particle prote...591.6     33.9     34     53GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
31P0AGD9    453   SRP54_ECO57 Signal recognition particle prote...591.6     33.9     34     53GO:0005786; C:signal recognition particle, endoplasmic reticulum targeting; IEA:UniProtKB-KW.
GO:0008312; F:7S RNA binding; IEA:InterPro.::GO:0005525; F:GTP binding; IEA:UniProtKB-KW.::GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; IEA:InterPro.
records
Previous ‹‹ ›› Next Total records: 41 1 - 30
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::