Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL197C
Length:
661
Number of sequences:
5887
Description:
YNL197C WHI3 SGDID:S000005141, Chr XIV from 269593-267608, Genome Release 64-1-1, reverse complement, Verified ORF, "RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci; cytoplasmic retention factor for Cdc28p and associated cyclins; regulates cell fate and dose-dependently regulates the critical cell size required for passage through Start"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31Q60899    360   ELAV2_MOUSE ELAV-like protein 2 OS=Mus muscul...870.13     38.9     37     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
32Q5R9Z6    359   ELAV2_PONAB ELAV-like protein 2 OS=Pongo abel...870.13     38.9     37     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
33Q12926    359   ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapie...870.13     38.9     37     51
GO:0003730; F:mRNA 3'-UTR binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0006355; P:regulation of transcription, DNA-dependent; TAS:ProtInc.
34Q8CH84    359   ELAV2_RAT ELAV-like protein 2 OS=Rattus norve...870.14     38.9     37     51
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
35Q28GD4    375   ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tr...870.15     38.5     37     51GO:0005938; C:cell cortex; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.
36Q91903    389   ELAV2_XENLA ELAV-like protein 2 OS=Xenopus la...870.17     38.5     37     51GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017131; F:uridine-rich cytoplasmic polyadenylylation element binding; IDA:UniProtKB.
GO:0008298; P:intracellular mRNA localization; IMP:UniProtKB.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0007399; P:nervous system development; IMP:UniProtKB.::GO:0051260; P:protein homooligomerization; IDA:UniProtKB.
37Q9LEB3    428   RBP47_NICPL Polyadenylate-binding protein RBP...691     36.2     35     51GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:UniProtKB.
GO:0034605; P:cellular response to heat; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
38P26686    376   SRR55_DROME Serine-arginine protein 55 OS=Dro...680.2     38.1     34     49GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0016607; C:nuclear speck; IDA:FlyBase.::GO:0005700; C:polytene chromosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0035327; C:transcriptionally active chromatin; IDA:FlyBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007067; P:mitosis; IMP:FlyBase.::GO:0006376; P:mRNA splice site selection; ISS:FlyBase.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; IMP:FlyBase.
39P32605    298   RU1A_YEAST U1 small nuclear ribonucleoprotein...680.21     38.1     37     50GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030619; F:U1 snRNA binding; IPI:SGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IGI:SGD.
40O43040    363   CTF1_SCHPO Cleavage and termination factor 1 ...890.23     38.1     28     46GO:0005829; C:cytosol; IDA:PomBase.::GO:0005847; C:mRNA cleavage and polyadenylation specificity factor complex; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006378; P:mRNA polyadenylation; IC:PomBase.
41Q9HCJ3    691   RAVR2_HUMAN Ribonucleoprotein PTB-binding 2 O...730.23     38.5     34     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
42P17225    527   PTBP1_MOUSE Polypyrimidine tract-binding prot...1080.23     38.1     29     44GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
43Q29099    557   PTBP1_PIG Polypyrimidine tract-binding protei...1070.25     38.1     29     45GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0048025; P:negative regulation of nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
44O74978    276   YQL5_SCHPO Uncharacterized RNA-binding protei...760.26     37.7     36     49GO:0005730; C:nucleolus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0042254; P:ribosome biogenesis; ISS:PomBase.
45Q7TPD6    673   RAVR2_MOUSE Ribonucleoprotein PTB-binding 2 O...730.3     38.1     34     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
46Q9UT83    609   MUG28_SCHPO Meiotically up-regulated gene 28 ...680.3     38.1     32     50GO:0005619; C:ascospore wall; IDA:PomBase.::GO:0005737; C:cytoplasm; IDA:PomBase.::GO:0005628; C:prospore membrane; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0031321; P:ascospore-type prospore assembly; IMP:PomBase.::GO:0007126; P:meiosis; IEA:UniProtKB-KW.
47B8AM21    232   RU2B_ORYSI U2 small nuclear ribonucleoprotein...820.34     37     30     48GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
48Q0DKM4    253   RU1A_ORYSJ U1 small nuclear ribonucleoprotein...1230.36     37     25     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
49A2Y0J7    253   RU1A_ORYSI U1 small nuclear ribonucleoprotein...1230.36     37     25     41GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
50Q10MR0    232   RU2B_ORYSJ U2 small nuclear ribonucleoprotein...820.37     37     30     48GO:0015030; C:Cajal body; ISS:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
51Q8WN55    531   PTBP1_BOVIN Polypyrimidine tract-binding prot...1070.38     37.4     29     44GO:0005634; C:nucleus; ISS:AgBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051148; P:negative regulation of muscle cell differentiation; ISS:UniProtKB.::GO:0000381; P:regulation of alternative nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
52P28644    233   ROC1_SPIOL 28 kDa ribonucleoprotein, chloropl...830.42     36.6     37     45GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
53Q01085    375   TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens (...510.46     37     41     55GO:0010494; C:cytoplasmic stress granule; ISS:UniProtKB.::GO:0005764; C:lysosome; TAS:ProtInc.::GO:0005634; C:nucleus; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006952; P:defense response; TAS:ProtInc.::GO:0006917; P:induction of apoptosis; TAS:ProtInc.::GO:0006357; P:regulation of transcription from RNA polymerase II promoter; TAS:ProtInc.
54Q5ZML3    257   SRSF1_CHICK Serine/arginine-rich splicing fac...670.46     36.6     31     46GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
55Q8H1S6    229   RU2B2_ARATH U2 small nuclear ribonucleoprotei...1020.47     36.6     25     46GO:0015030; C:Cajal body; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
56Q8TC92    643   ENOX1_HUMAN Ecto-NOX disulfide-thiol exchange...360.49     37.4     39     72GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IDA:HPA.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
57Q8BHR2    643   ENOX1_MOUSE Ecto-NOX disulfide-thiol exchange...360.51     37.4     39     72GO:0005615; C:extracellular space; IEA:UniProtKB-SubCell.::GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
GO:0003676; F:nucleic acid binding; IEA:InterPro.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
GO:0022900; P:electron transport chain; IEA:UniProtKB-KW.::GO:0048511; P:rhythmic process; IEA:UniProtKB-KW.::GO:0006810; P:transport; IEA:UniProtKB-KW.
58Q5R7H2    248   SRSF1_PONAB Serine/arginine-rich splicing fac...670.52     36.6     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
59Q3YLA6    248   SRSF1_PIG Serine/arginine-rich splicing facto...670.52     36.6     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
60Q6PDM2    248   SRSF1_MOUSE Serine/arginine-rich splicing fac...670.52     36.6     31     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB.::GO:0050733; F:RS domain binding; IPI:MGI.
GO:0001701; P:in utero embryonic development; IMP:MGI.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; ISS:UniProtKB.
61Q07955    248   SRSF1_HUMAN Serine/arginine-rich splicing fac...670.52     36.6     31     46GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IDA:UniProtKB.
GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006406; P:mRNA export from nucleus; TAS:Reactome.::GO:0000395; P:nuclear mRNA 5'-splice site recognition; IDA:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
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