Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL178W
Length:
240
Number of sequences:
5887
Description:
YNL178W RPS3 SGDID:S000005122, Chr XIV from 302680-303402, Genome Release 64-1-1, Verified ORF, "Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P05750    240   RS3_YEAST 40S ribosomal protein S3 OS=Sacchar...2403e-173     484     100     100GO:0030686; C:90S preribosome; IDA:SGD.::GO:0022627; C:cytosolic small ribosomal subunit; IDA:SGD.::GO:0030688; C:preribosome, small subunit precursor; IDA:SGD.
GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IDA:SGD.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IDA:SGD.
GO:0002181; P:cytoplasmic translation; IC:SGD.::GO:0006407; P:rRNA export from nucleus; IMP:SGD.
2O60128    249   RS3_SCHPO 40S ribosomal protein S3 OS=Schizos...2361e-119     348     72     84GO:0022627; C:cytosolic small ribosomal subunit; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; ISS:PomBase.
GO:0002181; P:cytoplasmic translation; NAS:PomBase.
3Q9M339    249   RS32_ARATH 40S ribosomal protein S3-2 OS=Arab...2196e-107     316     71     84GO:0022627; C:cytosolic small ribosomal subunit; IDA:TAIR.::GO:0016020; C:membrane; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0006412; P:translation; IEA:InterPro.
4Q9FJA6    248   RS33_ARATH 40S ribosomal protein S3-3 OS=Arab...2234e-106     313     69     83GO:0022627; C:cytosolic small ribosomal subunit; IDA:TAIR.::GO:0016020; C:membrane; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0006412; P:translation; IEA:InterPro.
5P47835    246   RS32_XENLA 40S ribosomal protein S3-B OS=Xeno...2175e-106     313     71     84GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
6P02350    246   RS31_XENLA 40S ribosomal protein S3-A OS=Xeno...2178e-106     313     71     84GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
7P62909    243   RS3_RAT 40S ribosomal protein S3 OS=Rattus no...2411e-105     312     66     78GO:0022627; C:cytosolic small ribosomal subunit; IDA:RGD.::GO:0030425; C:dendrite; IDA:RGD.::GO:0012505; C:endomembrane system; IDA:RGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IC:RGD.
GO:0006412; P:translation; IC:RGD.
8P62908    243   RS3_MOUSE 40S ribosomal protein S3 OS=Mus mus...2411e-105     312     66     78
GO:0006412; P:translation; IEA:InterPro.
9E2RH47    243   RS3_CANFA 40S ribosomal protein S3 OS=Canis f...2411e-105     312     66     78GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
10Q90YS2    245   RS3_ICTPU 40S ribosomal protein S3 OS=Ictalur...2171e-105     312     71     84GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
11Q0Z8U2    243   RS3_PIG 40S ribosomal protein S3 OS=Sus scrof...2412e-105     311     66     78GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
12P23396    243   RS3_HUMAN 40S ribosomal protein S3 OS=Homo sa...2412e-105     311     66     78GO:0022627; C:cytosolic small ribosomal subunit; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0032587; C:ruffle membrane; IDA:UniProtKB.
GO:0003684; F:damaged DNA binding; IDA:UniProtKB.::GO:0003906; F:DNA-(apurinic or apyrimidinic site) lyase activity; IDA:UniProtKB.::GO:0004519; F:endonuclease activity; IMP:UniProtKB.::GO:0051536; F:iron-sulfur cluster binding; NAS:UniProtKB.::GO:0003729; F:mRNA binding; IDA:UniProtKB.::GO:0051059; F:NF-kappaB binding; IPI:UniProtKB.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.::GO:0003735; F:structural constituent of ribosome; IDA:UniProtKB.
GO:0006919; P:activation of cysteine-type endopeptidase activity involved in apoptotic process; IDA:UniProtKB.::GO:0006917; P:induction of apoptosis; IDA:UniProtKB.::GO:0045738; P:negative regulation of DNA repair; IMP:UniProtKB.::GO:0032088; P:negative regulation of NF-kappaB transcription factor activity; IMP:UniProtKB.::GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.::GO:0006974; P:response to DNA damage stimulus; IEP:UniProtKB.::GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome.::GO:0006414; P:translational elongation; TAS:Reactome.::GO:0006413; P:translational initiation; NAS:UniProtKB.::GO:0006415; P:translational termination; TAS:Reactome.::GO:0019083; P:viral transcription; TAS:Reactome.
13Q3T169    243   RS3_BOVIN 40S ribosomal protein S3 OS=Bos tau...2412e-105     311     66     78
GO:0006412; P:translation; IEA:InterPro.
14P79891    253   RS3_AMBME 40S ribosomal protein S3 OS=Ambysto...2172e-105     311     71     84GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
15Q06559    246   RS3_DROME 40S ribosomal protein S3 OS=Drosoph...2144e-105     311     71     85GO:0005811; C:lipid particle; IDA:FlyBase.::GO:0005875; C:microtubule associated complex; IDA:FlyBase.::GO:0016363; C:nuclear matrix; IDA:FlyBase.::GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.::GO:0008534; F:oxidized purine base lesion DNA N-glycosylase activity; IDA:FlyBase.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006281; P:DNA repair; IGI:FlyBase.::GO:0007067; P:mitosis; IMP:FlyBase.::GO:0043524; P:negative regulation of neuron apoptotic process; IMP:FlyBase.::GO:0006412; P:translation; IEA:InterPro.
16Q5R465    243   RS3_PONAB 40S ribosomal protein S3 OS=Pongo a...2415e-105     310     66     78GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
17Q9SIP7    250   RS31_ARATH 40S ribosomal protein S3-1 OS=Arab...2236e-105     310     69     82GO:0009507; C:chloroplast; IDA:TAIR.::GO:0022627; C:cytosolic small ribosomal subunit; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR.::GO:0005774; C:vacuolar membrane; IDA:TAIR.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0006412; P:translation; IEA:InterPro.
18P48153    243   RS3_MANSE 40S ribosomal protein S3 OS=Manduca...2282e-100     299     65     79GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
19P48152    247   RS3_CAEEL 40S ribosomal protein S3 OS=Caenorh...2133e-94     283     65     80GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006915; P:apoptotic process; IMP:WormBase.::GO:0008340; P:determination of adult lifespan; IMP:WormBase.::GO:0009792; P:embryo development ending in birth or egg hatching; IMP:WormBase.::GO:0040007; P:growth; IMP:WormBase.::GO:0019915; P:lipid storage; IMP:WormBase.::GO:0018996; P:molting cycle, collagen and cuticulin-based cuticle; IMP:WormBase.::GO:0002119; P:nematode larval development; IMP:WormBase.::GO:0000003; P:reproduction; IMP:WormBase.::GO:0006412; P:translation; IEA:InterPro.
20P90526    218   RS3_DICDI 40S ribosomal protein S3 OS=Dictyos...2099e-85     258     62     75GO:0005615; C:extracellular space; IDA:dictyBase.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase.::GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0005515; F:protein binding; IPI:dictyBase.::GO:0003723; F:RNA binding; ISS:dictyBase.::GO:0003735; F:structural constituent of ribosome; ISS:dictyBase.
GO:0006412; P:translation; IEA:InterPro.
21Q8SQM3    228   RS3_ENCCU 40S ribosomal protein S3 OS=Encepha...2073e-43     152     38     62GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
22Q46GA1    311   RS3_METBF 30S ribosomal protein S3P OS=Methan...2351e-35     134     36     54GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
23O59424    210   RS3_PYRHO 30S ribosomal protein S3P OS=NBRC 1...2092e-32     122     36     56GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
24A7I5P5    231   RS3_METB6 30S ribosomal protein S3P OS=Methan...2092e-32     123     33     58GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
25Q8PV44    307   RS3_METMA 30S ribosomal protein S3P OS=JCM 11...2174e-32     124     35     54GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
26A3CT03    234   RS3_METMJ 30S ribosomal protein S3P OS=Methan...2145e-32     122     32     56GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
27C5A280    209   RS3_THEGJ 30S ribosomal protein S3P OS=Thermo...1977e-31     118     36     56GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
28Q8TRU1    318   RS3_METAC 30S ribosomal protein S3P OS=C2A). ...2063e-30     119     34     55GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
29Q5JDH5    209   RS3_PYRKO 30S ribosomal protein S3P OS=(Therm...1974e-30     117     36     55GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
30Q3IMY2    305   RS3_NATPD 30S ribosomal protein S3P OS=Natron...2066e-30     118     29     57GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
31P20281    304   RS3_HALMA 30S ribosomal protein S3P OS=B-1809...2171e-29     117     29     56GO:0015935; C:small ribosomal subunit; IEA:InterPro.
GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.::GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
GO:0006412; P:translation; IEA:InterPro.
records
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