rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
91 | Q08937 | 291 | ROC2_NICSY 29 kDa ribonucleoprotein B, chloro... | 82 | 0.001 | 43.9 | 29 | 51 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 92 | O13741 | 438 | NOP12_SCHPO Nucleolar protein 12 OS=Schizosac... | 74 | 0.000002 | 53.5 | 36 | 55 | GO:0005730; C:nucleolus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; ISS:PomBase. | 93 | P15771 | 694 | NUCL_CHICK Nucleolin OS=Gallus gallus (Chicke... | 144 | 0.00001 | 51.2 | 28 | 55 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 94 | P49314 | 292 | ROC2_NICPL 31 kDa ribonucleoprotein, chloropl... | 82 | 0.001 | 44.3 | 30 | 51 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 95 | P40561 | 250 | SGN1_YEAST RNA-binding protein SGN1 OS=Saccha... | 102 | 0.000002 | 52.4 | 32 | 55 | GO:0005737; C:cytoplasm; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:SGD.::GO:0005515; F:protein binding; IPI:IntAct. | | | | | | | | | | GO:0016071; P:mRNA metabolic process; IGI:SGD. | 96 | P09651 | 372 | ROA1_HUMAN Heterogeneous nuclear ribonucleopr... | 70 | 0.001 | 43.9 | 31 | 53 | GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005737; C:cytoplasm; IDA:HGNC.::GO:0030530; C:heterogeneous nuclear ribonucleoprotein complex; TAS:ProtInc.::GO:0005730; C:nucleolus; IDA:HPA.::GO:0005654; C:nucleoplasm; IDA:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003697; F:single-stranded DNA binding; IDA:HGNC.::GO:0003727; F:single-stranded RNA binding; IC:HGNC. | | | | | | | | | | GO:0044419; P:interspecies interaction between organisms; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0051170; P:nuclear import; IDA:HGNC.::GO:0006405; P:RNA export from nucleus; IC:HGNC. | 97 | A5DW14 | 661 | PABP_LODEL Polyadenylate-binding protein, cyt... | 82 | 0.012 | 41.6 | 28 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 98 | P92964 | 264 | RSP31_ARATH Arginine/serine-rich-splicing fac... | 246 | 0.000003 | 52 | 23 | 43 | GO:0016607; C:nuclear speck; IDA:TAIR.::GO:0005681; C:spliceosomal complex; TAS:TAIR. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IDA:TAIR. | 99 | Q6FKG4 | 579 | PABP_CANGA Polyadenylate-binding protein, cyt... | 108 | 0.95 | 35.4 | 26 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 100 | P31209 | 653 | PABP_SCHPO Polyadenylate-binding protein, cyt... | 89 | 0.00005 | 48.9 | 31 | 53 | GO:0005829; C:cytosol; IDA:PomBase.::GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:PomBase. | | | | | | | | | | GO:0002183; P:cytoplasmic translational initiation; NAS:PomBase.::GO:0006406; P:mRNA export from nucleus; IMP:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006446; P:regulation of translational initiation; ISS:PomBase. | 101 | O89086 | 153 | RBM3_MOUSE Putative RNA-binding protein 3 OS=... | 74 | 0.000003 | 50.4 | 30 | 58 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0030425; C:dendrite; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0043023; F:ribosomal large subunit binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0035196; P:production of miRNAs involved in gene silencing by miRNA; IDA:MGI.::GO:0009409; P:response to cold; IDA:MGI.::GO:0006412; P:translation; IDA:MGI. | 102 | Q5AI15 | 629 | PABP_CANAL Polyadenylate-binding protein, cyt... | 92 | 0.027 | 40.4 | 25 | 58 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 103 | Q9UHX1 | 559 | PUF60_HUMAN Poly(U)-binding-splicing factor P... | 68 | 0.001 | 44.3 | 29 | 59 | GO:0005634; C:nucleus; IDA:HPA.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 104 | Q9WV25 | 564 | PUF60_RAT Poly(U)-binding-splicing factor PUF... | 68 | 0.001 | 44.3 | 29 | 59 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 105 | Q3UEB3 | 564 | PUF60_MOUSE Poly(U)-binding-splicing factor P... | 68 | 0.001 | 44.3 | 29 | 59 | GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 106 | Q2HJ60 | 341 | ROA2_BOVIN Heterogeneous nuclear ribonucleopr... | 163 | 0.000003 | 52.4 | 25 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 107 | Q5R469 | 558 | PUF60_PONAB Poly(U)-binding-splicing factor P... | 68 | 0.001 | 44.3 | 29 | 59 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 108 | Q8CGC6 | 750 | RBM28_MOUSE RNA-binding protein 28 OS=Mus mus... | 59 | 0.13 | 38.1 | 32 | 47 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 109 | A5A6H4 | 320 | ROA1_PANTR Heterogeneous nuclear ribonucleopr... | 70 | 0.002 | 43.5 | 31 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 110 | P49312 | 320 | ROA1_MOUSE Heterogeneous nuclear ribonucleopr... | 70 | 0.002 | 43.5 | 31 | 53 | GO:0005737; C:cytoplasm; ISS:HGNC.::GO:0005654; C:nucleoplasm; ISS:HGNC.::GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0003697; F:single-stranded DNA binding; ISS:HGNC. | | | | | | | | | | GO:0000380; P:alternative nuclear mRNA splicing, via spliceosome; IDA:MGI.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0051168; P:nuclear export; ISS:HGNC.::GO:0051170; P:nuclear import; ISS:HGNC. | 111 | P09867 | 320 | ROA1_BOVIN Heterogeneous nuclear ribonucleopr... | 70 | 0.002 | 43.5 | 31 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0051028; P:mRNA transport; IEA:UniProtKB-KW. | 112 | O14327 | 166 | PAB2_SCHPO Polyadenylate-binding protein 2 OS... | 82 | 0.000004 | 50.1 | 33 | 55 | GO:0005634; C:nucleus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; IDA:PomBase.::GO:0005515; F:protein binding; IPI:PomBase. | | | | | | | | | | GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; IMP:PomBase. | 113 | Q2HJG2 | 530 | PUF60_BOVIN Poly(U)-binding-splicing factor P... | 68 | 0.002 | 44.3 | 29 | 59 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 114 | P40565 | 148 | IST3_YEAST U2 snRNP component IST3 OS=Sacchar... | 90 | 0.000004 | 49.7 | 27 | 61 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0070274; C:RES complex; IDA:SGD.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005686; C:U2 snRNP; IDA:SGD. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000349; P:generation of catalytic spliceosome for first transesterification step; IMP:SGD.::GO:0006406; P:mRNA export from nucleus; IMP:SGD.::GO:0000245; P:spliceosomal complex assembly; IMP:SGD. | 115 | P04256 | 320 | ROA1_RAT Heterogeneous nuclear ribonucleoprot... | 70 | 0.002 | 43.1 | 31 | 53 | GO:0005737; C:cytoplasm; ISS:HGNC.::GO:0005654; C:nucleoplasm; ISS:HGNC.::GO:0005681; C:spliceosomal complex; ISS:HGNC. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:RGD.::GO:0003697; F:single-stranded DNA binding; ISS:HGNC. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0051168; P:nuclear export; ISS:HGNC.::GO:0051170; P:nuclear import; ISS:HGNC.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 116 | Q00916 | 300 | RU17_YEAST U1 small nuclear ribonucleoprotein... | 63 | 0.000005 | 51.6 | 40 | 62 | GO:0000243; C:commitment complex; IPI:SGD.::GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD. | | | | | | | | | | GO:0003729; F:mRNA binding; IPI:SGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0030619; F:U1 snRNA binding; IPI:SGD. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD. | 117 | Q28521 | 320 | ROA1_MACMU Heterogeneous nuclear ribonucleopr... | 70 | 0.002 | 43.5 | 31 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 118 | Q6IP09 | 633 | PABPB_XENLA Polyadenylate-binding protein 1-B... | 168 | 0.002 | 43.9 | 22 | 51 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005844; C:polysome; ISS:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 119 | P09406 | 471 | RU17_XENLA U1 small nuclear ribonucleoprotein... | 73 | 0.000006 | 52 | 36 | 59 | GO:0005681; C:spliceosomal complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:UniProtKB.::GO:0043484; P:regulation of RNA splicing; ISS:UniProtKB. | 120 | Q44554 | 103 | RBPB_NOSS1 Putative RNA-binding protein rbpB ... | 72 | 0.000006 | 48.9 | 28 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 121 | A3LXL0 | 632 | PABP_PICST Polyadenylate-binding protein, cyt... | 130 | 2.5 | 33.9 | 25 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. |