Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL175C
Length:
403
Number of sequences:
5887
Description:
YNL175C NOP13 SGDID:S000005119, Chr XIV from 308612-307401, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
631Q99K48    473   NONO_MOUSE Non-POU domain-containing octamer-...910.8     35.4     29     47
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
632B4N1L0    269   EI3G1_DROWI Eukaryotic translation initiation...550.8     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
633A1DGS2    290   EIF3G_NEOFI Eukaryotic translation initiation...1020.82     35     28     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
634B4MA85    269   EI3G1_DROVI Eukaryotic translation initiation...550.82     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
635Q5RFL9    471   NONO_PONAB Non-POU domain-containing octamer-...910.82     35.4     29     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
636Q15233    471   NONO_HUMAN Non-POU domain-containing octamer-...910.82     35.4     29     47GO:0016363; C:nuclear matrix; IDA:BHF-UCL.::GO:0042382; C:paraspeckles; IDA:MGI.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0042802; F:identical protein binding; IPI:IntAct.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; TAS:ProtInc.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
637Q5FVM4    476   NONO_RAT Non-POU domain-containing octamer-bi...910.83     35.4     29     47GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.::GO:0006281; P:DNA repair; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
638B4L710    269   EI3G1_DROMO Eukaryotic translation initiation...550.83     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
639B3MYX2    270   EI3G1_DROAN Eukaryotic translation initiation...550.83     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
640Q29GU0    269   EI3G1_DROPS Eukaryotic translation initiation...550.84     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
641B4GUY6    269   EI3G1_DROPE Eukaryotic translation initiation...550.84     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
642B4LM71    690   EIF3B_DROVI Eukaryotic translation initiation...450.84     35.4     33     64GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
643A2R7Z2    288   EIF3G_ASPNC Eukaryotic translation initiation...1020.85     35     28     44GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
644Q6BLU8    339   CWC2_DEBHA Pre-mRNA-splicing factor CWC2 OS=0...1010.86     35.4     28     49GO:0000974; C:Prp19 complex; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0017069; F:snRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:UniProtKB.::GO:0045787; P:positive regulation of cell cycle; ISS:UniProtKB.::GO:0033120; P:positive regulation of RNA splicing; ISS:UniProtKB.::GO:0000387; P:spliceosomal snRNP assembly; ISS:UniProtKB.
645Q9Y6M1    599   IF2B2_HUMAN Insulin-like growth factor 2 mRNA...940.87     35.4     28     55GO:0044430; C:cytoskeletal part; IDA:BHF-UCL.::GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; IDA:BHF-UCL.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0048027; F:mRNA 5'-UTR binding; IDA:BHF-UCL.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0045182; F:translation regulator activity; ISS:BHF-UCL.
GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc.::GO:0017148; P:negative regulation of translation; ISS:BHF-UCL.::GO:0042035; P:regulation of cytokine biosynthetic process; IC:BHF-UCL.
646B4J4G8    269   EI3G1_DROGR Eukaryotic translation initiation...550.88     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
647Q8VC70    383   RBMS2_MOUSE RNA-binding motif, single-strande...570.88     35.4     32     49GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
648P34217    668   PIN4_YEAST RNA-binding protein PIN4 OS=Saccha...400.91     35.4     35     63GO:0005737; C:cytoplasm; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000077; P:DNA damage checkpoint; IGI:SGD.::GO:0000086; P:G2/M transition of mitotic cell cycle; IMP:SGD.
649C8V330    289   EIF3G_EMENI Eukaryotic translation initiation...910.91     35     27     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
650B4NFY1    268   EI3G2_DROWI Eukaryotic translation initiation...550.92     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
651A7SKE9    294   EIF3G_NEMVE Eukaryotic translation initiation...560.92     35     34     61GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
652Q9LYN7    907   AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis...770.92     35.4     30     47
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007126; P:meiosis; IEA:UniProtKB-KW.::GO:0048507; P:meristem development; IGI:TAIR.::GO:0045927; P:positive regulation of growth; IMP:UniProtKB.::GO:0045836; P:positive regulation of meiosis; IMP:UniProtKB.
653Q09702    529   NRD1_SCHPO Negative regulator of differentiat...1711.4     35     24     42GO:0005829; C:cytosol; IDA:PomBase.
GO:0003729; F:mRNA binding; TAS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.
GO:0031138; P:negative regulation of conjugation with cellular fusion; IGI:PomBase.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW.
654O59670    115   PM14_SCHPO Pre-mRNA branch site p14-like prot...790.95     33.5     29     52GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase.
GO:0000384; F:first spliceosomal transesterification activity; ISS:PomBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.
655Q4V7D7    420   RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=R...830.97     35     33     49GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO:0005487; F:nucleocytoplasmic transporter activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0017069; F:snRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033554; P:cellular response to stress; ISS:UniProtKB.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:UniProtKB.::GO:0090316; P:positive regulation of intracellular protein transport; ISS:UniProtKB.::GO:0033120; P:positive regulation of RNA splicing; ISS:UniProtKB.
656B3MSP2    269   EI3G2_DROAN Eukaryotic translation initiation...551     35     31     58GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.::GO:0008270; F:zinc ion binding; IEA:InterPro.
657Q6NVF9    551   CPSF6_MOUSE Cleavage and polyadenylation spec...701     35.4     29     53GO:0005849; C:mRNA cleavage factor complex; ISS:UniProtKB.
GO:0003729; F:mRNA binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB.
658Q9XSR3    592   RBM47_CANFA RNA-binding protein 47 OS=Canis f...2191.1     35.4     23     42GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
659P86049    533   RBM46_MOUSE Probable RNA-binding protein 46 O...581.1     35     31     59
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
660Q5ZM16    420   RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS...831.1     35     33     49GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0005487; F:nucleocytoplasmic transporter activity; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0036002; F:pre-mRNA binding; ISS:UniProtKB.::GO:0017069; F:snRNA binding; ISS:UniProtKB.::GO:0008270; F:zinc ion binding; IEA:InterPro.
GO:0033554; P:cellular response to stress; ISS:UniProtKB.::GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:UniProtKB.::GO:0090316; P:positive regulation of intracellular protein transport; ISS:UniProtKB.::GO:0033120; P:positive regulation of RNA splicing; ISS:UniProtKB.
661Q6BTS9    462   NOP12_DEBHA Nucleolar protein 12 OS=0083 / IG...883.3     33.5     27     48GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
records
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