Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL175C
Length:
403
Number of sequences:
5887
Description:
YNL175C NOP13 SGDID:S000005119, Chr XIV from 308612-307401, Genome Release 64-1-1, reverse complement, Verified ORF, "Nucleolar protein found in preribosomal complexes; contains an RNA recognition motif (RRM)"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
451Q91903    389   ELAV2_XENLA ELAV-like protein 2 OS=Xenopus la...810.03     40     22     52GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017131; F:uridine-rich cytoplasmic polyadenylylation element binding; IDA:UniProtKB.
GO:0008298; P:intracellular mRNA localization; IMP:UniProtKB.::GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.::GO:0007399; P:nervous system development; IMP:UniProtKB.::GO:0051260; P:protein homooligomerization; IDA:UniProtKB.
452Q0U6E7    281   EIF3G_PHANO Eukaryotic translation initiation...1020.032     39.7     30     47GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
453Q924M5    281   BOLL_MOUSE Protein boule-like OS=Mus musculus...630.033     39.7     32     59GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
454Q06AA4    282   SNRPA_PIG U1 small nuclear ribonucleoprotein ...940.034     39.7     28     51GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
455Q2KIR1    282   SNRPA_BOVIN U1 small nuclear ribonucleoprotei...940.034     39.7     28     51GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
456Q62826    690   HNRPM_RAT Heterogeneous nuclear ribonucleopro...1090.076     38.9     28     50GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0003823; F:antigen binding; IMP:RGD.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:BHF-UCL.::GO:0003723; F:RNA binding; TAS:RGD.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
457P09012    282   SNRPA_HUMAN U1 small nuclear ribonucleoprotei...940.035     39.3     28     51GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0005681; C:spliceosomal complex; IDA:HGNC.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:HGNC.
458P53927    220   NOP15_YEAST Ribosome biogenesis protein 15 OS...750.035     39.3     25     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0030687; C:preribosome, large subunit precursor; IDA:SGD.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000915; P:cytokinesis, actomyosin contractile ring assembly; IMP:SGD.::GO:0042273; P:ribosomal large subunit biogenesis; IPI:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
459Q8SR30    502   PABP_ENCCU Polyadenylate-binding protein, cyt...751.7     34.7     25     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
460Q5R5P4    593   RBM47_PONAB RNA-binding protein 47 OS=Pongo a...2190.038     40     23     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
461A0AV96    593   RBM47_HUMAN RNA-binding protein 47 OS=Homo sa...2190.038     40     23     43GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
462Q8JZV4    413   RBM41_MOUSE RNA-binding protein 41 OS=Mus mus...960.04     39.7     34     56
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
463Q5RK09    320   EIF3G_RAT Eukaryotic translation initiation f...550.04     39.3     38     58GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
464Q9Z1D1    320   EIF3G_MOUSE Eukaryotic translation initiation...550.04     39.3     38     58GO:0005852; C:eukaryotic translation initiation factor 3 complex; IDA:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
465Q54J05    241   RU2B_DICDI U2 small nuclear ribonucleoprotein...880.041     38.9     30     53GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.
466Q8N9W6    283   BOLL_HUMAN Protein boule-like OS=Homo sapiens...1470.041     39.3     23     46GO:0005737; C:cytoplasm; IDA:MGI.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.::GO:0008494; F:translation activator activity; IDA:UniProtKB.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007126; P:meiosis; IDA:MGI.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0045948; P:positive regulation of translational initiation; IDA:UniProtKB.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
467P92966    356   RSP41_ARATH Arginine/serine-rich-splicing fac...1980.042     39.3     24     41GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; NAS:TAIR.
468O75821    320   EIF3G_HUMAN Eukaryotic translation initiation...550.042     39.3     38     58GO:0005829; C:cytosol; TAS:Reactome.::GO:0005852; C:eukaryotic translation initiation factor 3 complex; IDA:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
469B5E081    690   EIF3B_DROPS Eukaryotic translation initiation...450.042     39.7     38     67GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
470B4GAY7    690   EIF3B_DROPE Eukaryotic translation initiation...450.042     39.7     38     67GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; ISS:UniProtKB.
GO:0006446; P:regulation of translational initiation; ISS:UniProtKB.
471Q8WP23    283   BOLL_MACFA Protein boule-like OS=Macaca fasci...1470.042     39.3     23     46GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.::GO:0007275; P:multicellular organismal development; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.::GO:0007283; P:spermatogenesis; IEA:UniProtKB-KW.
472P70372    326   ELAV1_MOUSE ELAV-like protein 1 OS=Mus muscul...810.043     39.3     22     52GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IDA:MGI.
GO:0017091; F:AU-rich element binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; IMP:MGI.
473Q4P8R9    651   PABP_USTMA Polyadenylate-binding protein, cyt...1230.41     36.6     28     48GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
474Q1JQ73    337   ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus ...810.044     39.3     23     51GO:0005938; C:cell cortex; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
GO:0003730; F:mRNA 3'-UTR binding; IDA:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008266; F:poly(U) RNA binding; IDA:UniProtKB.::GO:0005515; F:protein binding; IPI:UniProtKB.
GO:0007369; P:gastrulation; IMP:UniProtKB.::GO:0008298; P:intracellular mRNA localization; IMP:UniProtKB.::GO:0048255; P:mRNA stabilization; IGI:UniProtKB.::GO:0031440; P:regulation of mRNA 3'-end processing; IC:UniProtKB.
475Q3ZC12    320   EIF3G_BOVIN Eukaryotic translation initiation...550.045     39.3     38     58GO:0005852; C:eukaryotic translation initiation factor 3 complex; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0048471; C:perinuclear region of cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
476B4K7S5    259   EI3G2_DROMO Eukaryotic translation initiation...550.046     38.9     35     60GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
477Q15717    326   ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapie...810.046     39.3     22     52GO:0005829; C:cytosol; TAS:Reactome.::GO:0005654; C:nucleoplasm; TAS:Reactome.
GO:0017091; F:AU-rich element binding; IDA:UniProtKB.::GO:0003729; F:mRNA binding; TAS:ProtInc.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO:0070935; P:3'-UTR-mediated mRNA stabilization; IDA:UniProtKB.::GO:0010467; P:gene expression; TAS:Reactome.::GO:0016071; P:mRNA metabolic process; TAS:Reactome.::GO:0007275; P:multicellular organismal development; TAS:ProtInc.::GO:0045727; P:positive regulation of translation; IDA:MGI.
478A4RHN3    303   EIF3G_MAGO7 Eukaryotic translation initiation...800.047     39.3     33     50GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003743; F:translation initiation factor activity; IEA:UniProtKB-KW.
479Q9GRX4    698   NONA_DROLR Protein no-on-transient A OS=Droso...760.049     39.7     39     58
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0050896; P:response to stimulus; IEA:UniProtKB-KW.::GO:0007601; P:visual perception; IEA:UniProtKB-KW.
480Q39244    250   RU1A_ARATH U1 small nuclear ribonucleoprotein...800.051     38.9     30     48GO:0005829; C:cytosol; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.::GO:0005685; C:U1 snRNP; IDA:UniProtKB.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0017069; F:snRNA binding; IEA:InterPro.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IEA:InterPro.::GO:0009651; P:response to salt stress; IGI:TAIR.
481Q10422    297   YDC1_SCHPO Uncharacterized RNA-binding protei...730.052     38.9     25     53GO:0005634; C:nucleus; IDA:PomBase.
GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
records
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