| rec. | Subject | Hit Length | Description | Align.Len | E value | Bit score | % ident. | % pos. | GO associations |
121 | A3LXL0 | 632 | PABP_PICST Polyadenylate-binding protein, cyt... | 130 | 2.5 | 33.9 | 25 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 122 | Q54BM2 | 565 | PAP1A_DICDI Polyadenylate-binding protein 1-A... | 87 | 2.1 | 34.3 | 23 | 51 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0045335; C:phagocytic vesicle; IDA:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:dictyBase. | 123 | Q08935 | 273 | ROC1_NICSY 29 kDa ribonucleoprotein A, chloro... | 114 | 0.0007 | 44.7 | 26 | 47 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 124 | Q15020 | 963 | SART3_HUMAN Squamous cell carcinoma antigen r... | 115 | 0.000008 | 51.6 | 27 | 50 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 125 | Q6IQE0 | 516 | PU60B_DANRE Poly(U)-binding-splicing factor P... | 91 | 0.0005 | 45.8 | 26 | 56 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0003677; F:DNA binding; IEA:UniProtKB-KW.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. | 126 | Q6GR16 | 629 | EPABB_XENLA Embryonic polyadenylate-binding p... | 92 | 0.006 | 42.4 | 23 | 59 | GO:0005737; C:cytoplasm; ISS:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB. | | | | | | | | | | GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 127 | P42731 | 629 | PABP2_ARATH Polyadenylate-binding protein 2 O... | 161 | 0.004 | 43.1 | 26 | 48 | GO:0005829; C:cytosol; IDA:TAIR. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0009651; P:response to salt stress; IEP:TAIR. | 128 | P48809 | 421 | RB27C_DROME Heterogeneous nuclear ribonucleop... | 59 | 0.0006 | 45.4 | 32 | 58 | GO:0005737; C:cytoplasm; IDA:FlyBase.::GO:0005654; C:nucleoplasm; IDA:FlyBase.::GO:0043234; C:protein complex; IPI:FlyBase.::GO:0030529; C:ribonucleoprotein complex; IDA:FlyBase. | | | | | | | | | | GO:0003730; F:mRNA 3'-UTR binding; IDA:FlyBase.::GO:0048027; F:mRNA 5'-UTR binding; NAS:FlyBase.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:FlyBase.::GO:0003697; F:single-stranded DNA binding; IDA:FlyBase. | | | | | | | | | | GO:0007411; P:axon guidance; IMP:FlyBase.::GO:0007298; P:border follicle cell migration; IMP:FlyBase.::GO:0007319; P:negative regulation of oskar mRNA translation; TAS:FlyBase.::GO:0045451; P:pole plasm oskar mRNA localization; IMP:FlyBase.::GO:0045727; P:positive regulation of translation; IDA:FlyBase.::GO:0048024; P:regulation of nuclear mRNA splicing, via spliceosome; IMP:FlyBase. | 129 | P98179 | 157 | RBM3_HUMAN Putative RNA-binding protein 3 OS=... | 74 | 0.00001 | 48.9 | 30 | 57 | GO:0030425; C:dendrite; ISS:UniProtKB.::GO:0005634; C:nucleus; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0045727; P:positive regulation of translation; ISS:UniProtKB. | 130 | Q9TTV2 | 341 | ROA2_SAGOE Heterogeneous nuclear ribonucleopr... | 163 | 0.00001 | 50.4 | 25 | 47 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell.::GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. | 131 | O74400 | 674 | YOCE_SCHPO Uncharacterized RNA-binding protei... | 58 | 1.9 | 34.7 | 29 | 50 | GO:0005730; C:nucleolus; IDA:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; ISS:PomBase. | 132 | P49313 | 279 | ROC1_NICPL 30 kDa ribonucleoprotein, chloropl... | 86 | 0.007 | 41.6 | 27 | 50 | GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. | 133 | P51992 | 385 | RO32_XENLA Heterogeneous nuclear ribonucleopr... | 190 | 0.00001 | 50.4 | 25 | 45 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 134 | Q6DRG1 | 402 | RBM42_DANRE RNA-binding protein 42 OS=Danio r... | 87 | 0.00002 | 50.4 | 31 | 54 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0002088; P:lens development in camera-type eye; IMP:ZFIN. | 135 | Q96IZ5 | 413 | RBM41_HUMAN RNA-binding protein 41 OS=Homo sa... | 117 | 0.00002 | 50.4 | 33 | 56 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 136 | O94290 | 217 | IST3_SCHPO U2 snRNP component ist3 OS=Schizos... | 77 | 0.00002 | 49.3 | 29 | 61 | GO:0005681; C:spliceosomal complex; NAS:PomBase.::GO:0005686; C:U2 snRNP; ISS:PomBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000245; P:spliceosomal complex assembly; ISS:PomBase. | 137 | Q6DEY7 | 629 | EPAB_XENTR Embryonic polyadenylate-binding pr... | 92 | 0.0006 | 45.4 | 24 | 59 | GO:0005737; C:cytoplasm; ISS:UniProtKB. | | | | | | | | | | GO:0031370; F:eukaryotic initiation factor 4G binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB.::GO:0043621; F:protein self-association; ISS:UniProtKB. | | | | | | | | | | GO:0043009; P:chordate embryonic development; ISS:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0006412; P:translation; IEA:UniProtKB-KW. | 138 | P51989 | 346 | RO21_XENLA Heterogeneous nuclear ribonucleopr... | 165 | 0.00002 | 50.1 | 24 | 47 | GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 139 | Q57014 | 101 | RBPA_SYNY3 Putative RNA-binding protein rbpA ... | 72 | 0.00002 | 47.4 | 28 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 140 | Q75BJ7 | 426 | NOP12_ASHGO Nucleolar protein 12 OS=Y-1056) (... | 76 | 0.00002 | 50.1 | 37 | 53 | GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006364; P:rRNA processing; IEA:UniProtKB-KW. | 141 | Q5REG1 | 981 | SART3_PONAB Squamous cell carcinoma antigen r... | 121 | 0.0006 | 45.8 | 26 | 48 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006396; P:RNA processing; IEA:InterPro. | 142 | Q9V3G3 | 300 | PPIE_DROME Peptidyl-prolyl cis-trans isomeras... | 74 | 0.00002 | 49.3 | 34 | 61 | GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003755; F:peptidyl-prolyl cis-trans isomerase activity; IEA:UniProtKB-KW.::GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:FlyBase.::GO:0006911; P:phagocytosis, engulfment; IMP:FlyBase.::GO:0006457; P:protein folding; IEA:UniProtKB-KW. | 143 | Q925G0 | 155 | RBM3_RAT Putative RNA-binding protein 3 OS=Ra... | 74 | 0.00002 | 47.8 | 28 | 57 | GO:0005737; C:cytoplasm; IDA:UniProtKB.::GO:0030425; C:dendrite; IDA:UniProtKB.::GO:0005634; C:nucleus; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045727; P:positive regulation of translation; IDA:UniProtKB. | 144 | Q54PB2 | 895 | MRD1_DICDI Multiple RNA-binding domain-contai... | 55 | 7.3 | 32.7 | 31 | 51 | GO:0005730; C:nucleolus; ISS:dictyBase. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0030515; F:snoRNA binding; ISS:dictyBase. | | | | | | | | | | GO:0006364; P:rRNA processing; ISS:dictyBase. | 145 | Q03251 | 169 | GRP8_ARATH Glycine-rich RNA-binding protein 8... | 69 | 0.00002 | 47.8 | 29 | 64 | GO:0005618; C:cell wall; IDA:TAIR.::GO:0009507; C:chloroplast; IDA:TAIR.::GO:0005794; C:Golgi apparatus; IDA:TAIR.::GO:0005730; C:nucleolus; IDA:TAIR.::GO:0005777; C:peroxisome; IDA:TAIR.::GO:0005886; C:plasma membrane; IDA:TAIR.::GO:0009506; C:plasmodesma; IDA:TAIR. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0045087; P:innate immune response; IDA:TAIR.::GO:0009737; P:response to abscisic acid stimulus; IDA:TAIR.::GO:0009409; P:response to cold; IEP:TAIR.::GO:0009651; P:response to salt stress; IEP:TAIR.::GO:0010043; P:response to zinc ion; IEP:TAIR. | 146 | Q28IQ9 | 166 | CIRBP_XENTR Cold-inducible RNA-binding protei... | 73 | 0.00002 | 47.8 | 29 | 60 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0019899; F:enzyme binding; ISS:UniProtKB.::GO:0003730; F:mRNA 3'-UTR binding; ISS:UniProtKB.::GO:0000166; F:nucleotide binding; IEA:InterPro. | | | | | | | | | | GO:0016477; P:cell migration; ISS:UniProtKB.::GO:0007369; P:gastrulation; ISS:UniProtKB.::GO:0048255; P:mRNA stabilization; ISS:UniProtKB.::GO:0060212; P:negative regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.::GO:0022008; P:neurogenesis; ISS:UniProtKB.::GO:0045727; P:positive regulation of translation; ISS:UniProtKB.::GO:0048793; P:pronephros development; ISS:UniProtKB.::GO:0009409; P:response to cold; ISS:UniProtKB. | 147 | Q9WX39 | 105 | RBPF_NOSS1 Putative RNA-binding protein rbpF ... | 72 | 0.00002 | 47 | 28 | 60 | | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | | 148 | Q54ZS8 | 222 | PABP2_DICDI Polyadenylate-binding protein 2 O... | 60 | 0.00003 | 48.5 | 33 | 62 | GO:0005737; C:cytoplasm; ISS:UniProtKB.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; ISS:UniProtKB. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; ISS:UniProtKB. | 149 | Q6CDH3 | 629 | PABP_YARLI Polyadenylate-binding protein, cyt... | 74 | 0.006 | 42.4 | 27 | 53 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW. | | | | | | | | | | GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0006417; P:regulation of translation; IEA:UniProtKB-KW. | 150 | Q8CCS6 | 302 | PABP2_MOUSE Polyadenylate-binding protein 2 O... | 60 | 0.00003 | 49.3 | 33 | 60 | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; ISS:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0008143; F:poly(A) RNA binding; TAS:MGI. | | | | | | | | | | GO:0006378; P:mRNA polyadenylation; TAS:MGI. | 151 | Q86U42 | 306 | PABP2_HUMAN Polyadenylate-binding protein 2 O... | 60 | 0.00003 | 49.3 | 33 | 60 | GO:0005737; C:cytoplasm; IDA:HPA.::GO:0005654; C:nucleoplasm; TAS:Reactome.::GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB. | | | | | | | | | | GO:0000166; F:nucleotide binding; IEA:InterPro.::GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; TAS:ProtInc. | | | | | | | | | | GO:0046778; P:modification by virus of host mRNA processing; TAS:Reactome.::GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.::GO:0006936; P:muscle contraction; TAS:ProtInc.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; TAS:Reactome.::GO:0016973; P:poly(A)+ mRNA export from nucleus; IMP:UniProtKB.::GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.::GO:0019058; P:viral infectious cycle; TAS:Reactome. |
