Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
Home About FGC Use Cases Species List

UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL147W
Length:
115
Number of sequences:
5887
Description:
YNL147W LSM7 SGDID:S000005091, Chr XIV from 350940-350957,351054-351383, Genome Release 64-1-1, Verified ORF, "Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
31P63162    240   RSMN_HUMAN Small nuclear ribonucleoprotein-as...730.00008     43.5     34     56GO:0030532; C:small nuclear ribonucleoprotein complex; TAS:UniProtKB.::GO:0005681; C:spliceosomal complex; TAS:UniProtKB.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0008380; P:RNA splicing; TAS:UniProtKB.
32Q9N1Q0    240   RSMB_MACEU Small nuclear ribonucleoprotein-as...730.00008     43.5     36     56GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
33Q17QN3    240   RSMN_BOVIN Small nuclear ribonucleoprotein-as...730.0001     42.7     36     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
34Q10163    147   RSMB_SCHPO Small nuclear ribonucleoprotein-as...590.0002     41.2     37     53GO:0005829; C:cytosol; IDA:PomBase.::GO:0005681; C:spliceosomal complex; IC:PomBase.::GO:0005685; C:U1 snRNP; IDA:PomBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000395; P:nuclear mRNA 5'-splice site recognition; IC:PomBase.
35P40018    196   RSMB_YEAST Small nuclear ribonucleoprotein-as...830.0004     41.2     35     52GO:0005685; C:U1 snRNP; IDA:SGD.::GO:0071004; C:U2-type prespliceosome; IDA:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005682; C:U5 snRNP; IDA:SGD.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.
36P47017    172   LSM1_YEAST Sm-like protein LSm1 OS=Saccharomy...720.0005     40.4     33     51GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005845; C:mRNA cap binding complex; IPI:SGD.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0000339; F:RNA cap binding; IGI:SGD.
GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IGI:SGD.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
37P40089    93   LSM5_YEAST U6 snRNA-associated Sm-like protei...690.001     38.5     29     58GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
38P40070    187   LSM4_YEAST U6 snRNA-associated Sm-like protei...720.001     40     35     53GO:0000932; C:cytoplasmic mRNA processing body; IDA:SGD.::GO:0005730; C:nucleolus; IDA:SGD.::GO:0005732; C:small nucleolar ribonucleoprotein complex; IPI:SGD.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; IDA:SGD.::GO:0005688; C:U6 snRNP; IDA:SGD.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; IMP:SGD.
GO:0033962; P:cytoplasmic mRNA processing body assembly; IMP:SGD.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IPI:SGD.::GO:0000956; P:nuclear-transcribed mRNA catabolic process; TAS:SGD.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
39P17136    214   RSMB_RAT Small nuclear ribonucleoprotein-asso...650.001     40     35     54GO:0005683; C:U7 snRNP; ISS:UniProtKB.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
40O74483    94   LSM8_SCHPO U6 snRNA-associated Sm-like protei...690.001     38.1     30     57GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:PomBase.::GO:0005681; C:spliceosomal complex; NAS:PomBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0045292; P:nuclear mRNA cis splicing, via spliceosome; ISS:PomBase.::GO:0006364; P:rRNA processing; ISS:PomBase.
41Q55A45    274   RSMB_DICDI Small nuclear ribonucleoprotein-as...760.002     39.7     29     57GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
42Q1ZXK3    97   LSM3_DICDI Probable U6 snRNA-associated Sm-li...900.002     37.7     33     52GO:0005730; C:nucleolus; ISS:dictyBase.::GO:0005732; C:small nucleolar ribonucleoprotein complex; ISS:dictyBase.::GO:0046540; C:U4/U6 x U5 tri-snRNP complex; ISS:dictyBase.::GO:0005688; C:U6 snRNP; ISS:dictyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:dictyBase.
43Q54W83    129   LSM1_DICDI Probable U6 snRNA-associated Sm-li...720.002     38.1     33     51GO:0000932; C:cytoplasmic mRNA processing body; ISS:dictyBase.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0000339; F:RNA cap binding; ISS:dictyBase.
GO:0006402; P:mRNA catabolic process; ISS:dictyBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
44Q6FYB6    79   LSM6_CANGA U6 snRNA-associated Sm-like protei...680.003     37     37     53GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.::GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.::GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.::GO:0008033; P:tRNA processing; IEA:UniProtKB-KW.
45Q5RCP3    96   NAA38_PONAB N-alpha-acetyltransferase 38, Nat...390.004     37     38     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
46Q6ZWM4    96   NAA38_MOUSE N-alpha-acetyltransferase 38, Nat...390.004     37     38     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
47O95777    96   NAA38_HUMAN N-alpha-acetyltransferase 38, Nat...390.004     37     38     67GO:0005634; C:nucleus; NAS:UniProtKB.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0017070; F:U6 snRNA binding; NAS:UniProtKB.
GO:0000398; P:nuclear mRNA splicing, via spliceosome; NAS:UniProtKB.
48Q3ZCE0    96   NAA38_BOVIN N-alpha-acetyltransferase 38, Nat...390.004     37     38     67GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
49Q465S1    72   RUXX_METBF Putative snRNP Sm-like protein OS=...690.006     36.2     39     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
50Q12U30    72   RUXX_METBU Putative snRNP Sm-like protein OS=...690.01     35.4     38     57GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
51P87173    140   LSM1_SCHPO U6 snRNA-associated Sm-like protei...390.013     36.6     46     64GO:0000932; C:cytoplasmic mRNA processing body; ISS:PomBase.::GO:0005829; C:cytosol; IDA:PomBase.::GO:0005845; C:mRNA cap binding complex; ISS:PomBase.::GO:0005634; C:nucleus; IDA:PomBase.
GO:0000339; F:RNA cap binding; ISS:PomBase.
GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; ISS:PomBase.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
52Q05856    199   RSMB_DROME Small nuclear ribonucleoprotein-as...820.028     36.2     28     51GO:0015030; C:Cajal body; IDA:FlyBase.::GO:0071013; C:catalytic step 2 spliceosome; IDA:FlyBase.::GO:0045495; C:pole plasm; IDA:FlyBase.::GO:0071011; C:precatalytic spliceosome; IDA:FlyBase.::GO:0030532; C:small nuclear ribonucleoprotein complex; ISS:FlyBase.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0007281; P:germ cell development; IMP:FlyBase.::GO:0008406; P:gonad development; IMP:FlyBase.::GO:0007052; P:mitotic spindle organization; IMP:FlyBase.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; ISS:FlyBase.
53P62311    102   LSM3_MOUSE U6 snRNA-associated Sm-like protei...870.029     35     30     47
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
54P62310    102   LSM3_HUMAN U6 snRNA-associated Sm-like protei...870.029     35     30     47GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.::GO:0005829; C:cytosol; TAS:Reactome.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0000398; P:nuclear mRNA splicing, via spliceosome; IC:UniProtKB.
55Q32PE9    102   LSM3_BOVIN U6 snRNA-associated Sm-like protei...870.029     35     30     47
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
56Q5R628    91   LSM5_PONAB U6 snRNA-associated Sm-like protei...500.03     34.7     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
57P62322    91   LSM5_MOUSE U6 snRNA-associated Sm-like protei...500.03     34.7     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:MGI.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
58Q9Y4Y9    91   LSM5_HUMAN U6 snRNA-associated Sm-like protei...500.03     34.7     32     56GO:0005829; C:cytosol; TAS:Reactome.::GO:0005634; C:nucleus; TAS:ProtInc.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0005515; F:protein binding; IPI:IntAct.::GO:0003723; F:RNA binding; TAS:ProtInc.
GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.::GO:0006397; P:mRNA processing; TAS:ProtInc.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
59Q2HJH0    91   LSM5_BOVIN U6 snRNA-associated Sm-like protei...500.03     34.7     32     56GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.::GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
60Q8TL47    72   RUXX_METAC Putative snRNP Sm-like protein OS=...690.036     33.9     38     54GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
61O26745    81   RUXX_METTH Putative snRNP Sm-like protein OS=...740.051     33.9     34     49GO:0030529; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
records
Previous ‹‹ ›› Next Total records: 79 31 - 60
Elimate unknown annotation:
Filter for keyword on hit description:
Select upper E value:
Select lower bit score:
Select lower %idenity value:
Select lower %positive value:
Taxonomic division:
Lower limit on hit length:
Lower limit on alignment length::