Fungal Genome Collection
University of Nebraska Lincoln
School of Biological Sciences and Center for Plant Science Innovation
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UniProt_SwissProt BLAST: Single locus
Species:
Saccharomyces cerevisiae S288C
Locus:
YNL139C
Length:
1597
Number of sequences:
5887
Description:
YNL139C THO2 SGDID:S000005083, Chr XIV from 365717-360924, Genome Release 64-1-1, reverse complement, Verified ORF, "Subunit of the THO complex, which is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids"
rec.SubjectHit LengthDescriptionAlign.LenE valueBit score% ident.  % pos.GO associations
1P53552    1597   THO2_YEAST THO complex subunit 2 OS=Saccharom...15970     3297     100     100GO:0000446; C:nucleoplasmic THO complex; IMP:SGD.::GO:0000445; C:THO complex part of transcription export complex; IPI:SGD.
GO:0003677; F:DNA binding; IPI:SGD.
GO:0006310; P:DNA recombination; IMP:SGD.::GO:0031124; P:mRNA 3'-end processing; IMP:SGD.::GO:0006406; P:mRNA export from nucleus; IMP:SGD.::GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; IMP:SGD.::GO:0006283; P:transcription-coupled nucleotide-excision repair; IMP:SGD.
2Q09779    1628   YATE_SCHPO Uncharacterized protein C1D4.14 OS...14768e-65     247     22     40GO:0000347; C:THO complex; ISS:PomBase.
GO:0003676; F:nucleic acid binding; ISS:PomBase.
GO:0006406; P:mRNA export from nucleus; ISS:PomBase.::GO:0006368; P:transcription elongation from RNA polymerase II promoter; ISS:PomBase.
3B1MTK1    1600   THOC2_CALMO THO complex subunit 2 OS=Calliceb...11313e-41     170     22     39GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
4B0KWH8    1600   THOC2_CALJA THO complex subunit 2 OS=Callithr...11313e-41     170     22     39
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
5B2KI97    1576   THOC2_RHIFE THO complex subunit 2 OS=Rhinolop...800.33     39.7     38     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
6Q8NI27    1593   THOC2_HUMAN THO complex subunit 2 OS=Homo sap...800.23     40     38     54GO:0000445; C:THO complex part of transcription export complex; IDA:UniProtKB.
GO:0005515; F:protein binding; IPI:UniProtKB.::GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0046784; P:intronless viral mRNA export from host nucleus; IDA:UniProtKB.::GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
7C1FXW9    1613   THOC2_DASNO THO complex subunit 2 OS=Dasypus ...800.33     39.7     38     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
8B1AZI6    1594   THOC2_MOUSE THO complex subunit 2 OS=Mus musc...800.31     39.7     38     54GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.::GO:0051028; P:mRNA transport; IEA:UniProtKB-KW.::GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
9P0CA91    221   VF196_ASFM2 Late protein I196L OS=African swi...1760.34     38.1     28     40
10Q96LB3    600   IFT74_HUMAN Intraflagellar transport protein ...1020.73     38.1     31     46GO:0005813; C:centrosome; IDA:HPA.::GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.::GO:0030992; C:intraflagellar transport particle B; ISS:BHF-UCL.::GO:0009434; C:microtubule-based flagellum; ISS:BHF-UCL.
11A9BQJ1    659   MNMG_DELAS tRNA uridine 5-carboxymethylaminom...882     36.6     30     49GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO:0050660; F:flavin adenine dinucleotide binding; IEA:InterPro.
GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro.
12P78594    150   FCA1_CANAX Cytosine deaminase OS=Candida albi...588.4     33.1     34     53
GO:0004131; F:cytosine deaminase activity; IEA:EC.::GO:0008270; F:zinc ion binding; IEA:InterPro.
13Q2KN96    1101   CYTSA_XENTR Cytospin-A OS=Xenopus tropicalis ...839.9     34.7     35     51GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.::GO:0005921; C:gap junction; IEA:UniProtKB-SubCell.::GO:0005819; C:spindle; IEA:UniProtKB-SubCell.
GO:0007049; P:cell cycle; IEA:UniProtKB-KW.::GO:0051301; P:cell division; IEA:UniProtKB-KW.
records
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